# List of top-scoring protein chains for t06-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1u2wA 122 3.766 a.4.5.5 119487 2od5A 116 4.873 a.4.5.70 148736 1k6xA 352 5.933 c.2.1.2 68238 1a6sA 87 7.552 a.61.1.4 18134 1tvnA 293 8.196 c.1.8.3 119360 1wsuA 124 9.003 a.4.5.35,a.4.5.35 121245,121246 2zfdA 226 9.763 a.39.1.5 154406 2j0fA 482 9.945 2zkzA 99 10.36 2fozA 347 10.99 3ecoA 139 12.28 1hp1A 516 14.10 d.114.1.1,d.159.1.2 70976,70977 2qorA 204 15.39 1dwkA 156 16.50 a.35.1.4,d.72.1.1 17075,39606 1owlA 484 16.56 a.99.1.1,c.28.1.1 93647,93648 2pjpA 121 17.98 1uouA 474 20.24 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2of7A 260 21.55 2r2iA 198 23.31 3lsgA 103 23.74 3bddA 142 24.55 1r1uA 106 25.07 a.4.5.5 104771 2gb7A 305 25.28 1sfxA 109 25.38 a.4.5.50 105505 1wlzA 105 25.47 a.39.1.7 121024 1gky 187 25.82 1ljoA 77 26.73 b.38.1.1 73941 1ex7A 186 28.24 c.37.1.1 59537 7a3hA 303 30.00 c.1.8.3 28817 2dejA 350 31.22 1kk8B 139 31.65 a.39.1.5 77430 3draB 390 32.85 1gu2A 124 36.34 a.3.1.1 76348 1alvA 173 37.17 a.39.1.8 17370 1s1eA 224 37.52 a.39.1.5 112007 1gt1A 159 39.62 b.60.1.1 90515 1cqmA 101 39.93 d.58.14.1 39321 1xkzA 255 40.07 e.3.1.1 115426 2oqgA 114 40.14 3a46A 289 40.51 1k94A 165 40.72 a.39.1.8 68333 1lvaA 258 40.91 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1v32A 101 41.86 a.42.1.1 100277 1r1tA 122 44.95 a.4.5.5 104769 1uhnA 189 45.24 a.39.1.5 99399 2ct9A 208 46.36 1wdcB 156 48.36 a.39.1.5 17302 2w3cA 577 49.31 2j5aA 110 51.61 d.58.14.1 147886 1ulyA 192 53.11 a.4.5.58 113297 2i7aA 174 54.64 1lliA 92 55.18 a.35.1.2 17025 3c4bA 265 57.24 3gw2A 108 59.20 2j07A 420 64.52 a.99.1.1,c.28.1.1 137891,137892 3f2kA 226 64.63 1rw2A 152 65.93 a.118.19.1 97961 3broA 141 66.19 a.4.5.28 155517 2cxkA 95 66.28 b.1.18.1 131006 1xo5A 183 67.94 a.39.1.5 115680 2phpA 192 68.63 c.74.1.2 149474 3edtB 283 68.67 2bzeA 153 69.43 b.34.21.1 146224 1o0sA 605 72.99 c.2.1.7,c.58.1.3 86540,86541 1vg0A 650 73.22 c.3.1.3,d.16.1.6 108596,108597 3gfmA 146 75.37 3g3zA 145 77.36 1z1dA 103 77.69 a.4.5.16 124351 2bpqA 373 79.22 2c5wB 385 79.54 e.3.1.1 129958 2d1hA 109 80.50 a.4.5.50 131125 1dzkA 157 81.20 b.60.1.1 27096 2x5yA 173 83.59 2ajtA 500 84.03 b.43.2.2,c.85.1.2 126894,126895 3gflA 146 84.25 2a1vA 144 84.92 d.198.3.1 126019 3gx1A 130 85.71 1p4xA 250 85.72 a.4.5.28,a.4.5.28 87784,87785 3f6vA 151 85.75 3c6cA 316 85.78 1ks9A 291 86.56 a.100.1.7,c.2.1.6 68857,68858 3jy6A 276 89.28