# List of top-scoring protein chains for t06-w0.5-1-dssp-ehl2-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6sA	87	1.532	a.61.1.4	18134
1k6xA	352	3.260	c.2.1.2	68238
2od5A	116	8.818	a.4.5.70	148736
1u2wA	122	10.98	a.4.5.5	119487
1owlA	484	16.63	a.99.1.1,c.28.1.1	93647,93648
2qorA	204	20.96		
3edtB	283	21.07		
2gb7A	305	22.32		
2zfdA	226	23.09	a.39.1.5	154406
1alvA	173	24.03	a.39.1.8	17370
2fozA	347	26.67		
1ljoA	77	27.09	b.38.1.1	73941
1hp1A	516	27.37	d.114.1.1,d.159.1.2	70976,70977
2zkzA	99	27.51		
1gky	187	27.61		
2w3cA	577	28.55		
3ecoA	139	29.96		
1ovnA	248	31.60	a.71.1.1,c.47.1.7	93602,93603
1tvnA	293	32.13	c.1.8.3	119360
2j0fA	482	33.22		
1zq9A	285	35.74	c.66.1.24	125505
2r2iA	198	36.77		
1hr6A	475	36.85	d.185.1.1,d.185.1.1	61164,61165
1z1dA	103	37.31	a.4.5.16	124351
3bddA	142	37.75		
3c4bA	265	38.64		
2x5yA	173	40.10		
1wsuA	124	41.18	a.4.5.35,a.4.5.35	121245,121246
2dejA	350	43.90		
3c1vA	113	44.28	a.39.1.2	155867
1k94A	165	46.91	a.39.1.8	68333
1v32A	101	48.88	a.42.1.1	100277
1wlzA	105	51.33	a.39.1.7	121024
2of7A	260	53.44		
2phpA	192	53.85	c.74.1.2	149474
1ex7A	186	56.64	c.37.1.1	59537
3lsgA	103	56.68		
1vi0A	206	56.71	a.4.1.9,a.121.1.1	100720,100721
1gt1A	159	58.04	b.60.1.1	90515
3jy6A	276	58.50		
1q2hA	69	58.85	a.34.4.1	104498
2pjpA	121	63.85		
2p22C	192	64.30		
1vg0A	650	66.09	c.3.1.3,d.16.1.6	108596,108597
2ii2A	310	66.21		
1sfxA	109	66.57	a.4.5.50	105505
1uhnA	189	67.19	a.39.1.5	99399
1gu2A	124	67.73	a.3.1.1	76348
2i7aA	174	67.84		
1zxaA	67	68.39		
1q59A	172	73.15	f.1.4.1	95881
1ub0A	258	74.42	c.72.1.2	88394
2wmfA	581	76.39		
1wdcB	156	80.99	a.39.1.5	17302
1kk8B	139	81.36	a.39.1.5	77430
1o7dA	298	82.07	c.6.2.1	86641
2ajtA	500	83.54	b.43.2.2,c.85.1.2	126894,126895
3draB	390	84.82		
2q5wD	77	85.70		
1ks9A	291	85.95	a.100.1.7,c.2.1.6	68857,68858
3f2kA	226	86.27		
2j07A	420	88.56	a.99.1.1,c.28.1.1	137891,137892
3a46A	289	88.80		
2wmgA	581	89.42