# List of top-scoring protein chains for t06-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1a6sA 87 0.9505 a.61.1.4 18134 2od5A 116 4.854 a.4.5.70 148736 1k6xA 352 5.875 c.2.1.2 68238 1u2wA 122 6.677 a.4.5.5 119487 2zfdA 226 7.000 a.39.1.5 154406 2zkzA 99 7.473 1wsuA 124 8.532 a.4.5.35,a.4.5.35 121245,121246 2j0fA 482 9.328 2fozA 347 9.772 2r2iA 198 10.63 1owlA 484 12.26 a.99.1.1,c.28.1.1 93647,93648 2pjpA 121 12.50 1tvnA 293 13.37 c.1.8.3 119360 1hp1A 516 13.38 d.114.1.1,d.159.1.2 70976,70977 2gb7A 305 14.79 1alvA 173 15.03 a.39.1.8 17370 1sfxA 109 16.25 a.4.5.50 105505 1k94A 165 16.67 a.39.1.8 68333 2w3cA 577 19.93 1ks9A 291 19.99 a.100.1.7,c.2.1.6 68857,68858 1wlzA 105 22.96 a.39.1.7 121024 1dw0A 112 23.26 a.3.1.1 15911 2dejA 350 24.24 3ecoA 139 27.10 1kk8B 139 27.27 a.39.1.5 77430 3bddA 142 28.40 1uouA 474 28.73 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1gu2A 124 30.23 a.3.1.1 76348 2qorA 204 31.47 3c1vA 113 33.41 a.39.1.2 155867 3lsgA 103 34.02 1uhnA 189 34.70 a.39.1.5 99399 1gky 187 35.14 1v32A 101 35.33 a.42.1.1 100277 1zq9A 285 39.43 c.66.1.24 125505 1wdcB 156 41.38 a.39.1.5 17302 1gt1A 159 42.89 b.60.1.1 90515 2x5yA 173 43.84 2wmfA 581 45.60 2k6mS 67 45.60 1lvaA 258 46.38 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2rdpA 150 47.11 3jy6A 276 48.44 1z1dA 103 49.71 a.4.5.16 124351 2wmhA 581 50.53 1xrsA 516 51.23 c.1.19.4 115883 2of7A 260 51.61 2wmgA 581 53.13 1vhuA 211 53.27 c.50.1.2 100703 1ex7A 186 53.62 c.37.1.1 59537 2i7aA 174 54.00 3edtB 283 55.60 1hr6A 475 56.13 d.185.1.1,d.185.1.1 61164,61165 2bpqA 373 56.19 2j5aA 110 57.01 d.58.14.1 147886 2c5wB 385 58.47 e.3.1.1 129958 3gx1A 130 59.55 1w3wA 327 61.46 1jadA 251 62.14 h.4.10.1 66461 2ajtA 500 62.61 b.43.2.2,c.85.1.2 126894,126895 1yu5X 67 63.01 a.14.1.1 124039 1i4aA 318 64.71 a.65.1.1 61681 1q2hA 69 64.96 a.34.4.1 104498 1r1uA 106 65.63 a.4.5.5 104771 2yxlA 450 66.18 1vg0A 650 68.70 c.3.1.3,d.16.1.6 108596,108597 3g3zA 145 69.35 3gw2A 108 70.39 2ct9A 208 70.71 1jgsA 138 73.08 a.4.5.28 66683 1o7dA 298 73.43 c.6.2.1 86641 3f6vA 151 74.00 1s3jA 155 75.27 a.4.5.28 98437 3e6mA 161 78.17 1ljoA 77 78.40 b.38.1.1 73941 3daqA 292 82.20 2v6qA 173 82.48 1ovnA 248 83.20 a.71.1.1,c.47.1.7 93602,93603 1q59A 172 85.01 f.1.4.1 95881 1ulyA 192 85.15 a.4.5.58 113297 1y1xA 191 85.39 a.39.1.8 116374 2aajA 130 86.06 d.80.1.6 126481 3c6cA 316 87.12 2p13A 90 87.35 d.145.1.4 149152 2nnnA 140 88.30 1cqmA 101 88.54 d.58.14.1 39321 1dzkA 157 89.22 b.60.1.1 27096 1qzpA 68 89.36 a.14.1.1 96654 2j07A 420 89.37 a.99.1.1,c.28.1.1 137891,137892 1xo5A 183 89.48 a.39.1.5 115680