# List of top-scoring protein chains for t06-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2od5A	116	4.423	a.4.5.70	148736
1k6xA	352	5.310	c.2.1.2	68238
1a6sA	87	7.558	a.61.1.4	18134
1u2wA	122	8.106	a.4.5.5	119487
2zfdA	226	8.881	a.39.1.5	154406
2fozA	347	10.68		
1owlA	484	11.43	a.99.1.1,c.28.1.1	93647,93648
2qorA	204	11.81		
2gb7A	305	14.38		
2r2iA	198	15.32		
1alvA	173	15.33	a.39.1.8	17370
1wsuA	124	15.47	a.4.5.35,a.4.5.35	121245,121246
2dejA	350	15.79		
1gky	187	18.75		
2j0fA	482	19.57		
2zkzA	99	20.07		
1k94A	165	25.60	a.39.1.8	68333
2pjpA	121	25.95		
1ex7A	186	27.14	c.37.1.1	59537
1wlzA	105	27.20	a.39.1.7	121024
1hr6A	475	27.62	d.185.1.1,d.185.1.1	61164,61165
1tvnA	293	28.45	c.1.8.3	119360
2ct9A	208	30.06		
3edtB	283	30.14		
1hp1A	516	30.22	d.114.1.1,d.159.1.2	70976,70977
2of7A	260	30.68		
2x5yA	173	32.45		
1ljoA	77	33.94	b.38.1.1	73941
3ecoA	139	36.04		
3c4bA	265	36.73		
2w3cA	577	36.96		
1sfxA	109	37.45	a.4.5.50	105505
1gu2A	124	37.85	a.3.1.1	76348
2j5aA	110	38.18	d.58.14.1	147886
1vg0A	650	39.18	c.3.1.3,d.16.1.6	108596,108597
1v32A	101	41.38	a.42.1.1	100277
1gt1A	159	43.98	b.60.1.1	90515
1q2hA	69	44.24	a.34.4.1	104498
2i7aA	174	44.61		
1kk8B	139	45.64	a.39.1.5	77430
1vhuA	211	46.34	c.50.1.2	100703
1wdcB	156	47.50	a.39.1.5	17302
1ks9A	291	48.09	a.100.1.7,c.2.1.6	68857,68858
2h7bA	105	48.63	a.277.1.1	147237
1uhnA	189	49.04	a.39.1.5	99399
3i5aA	334	49.96		
2fkiA	126	50.81	d.198.3.1	133657
3draB	390	53.01		
1vi0A	206	53.39	a.4.1.9,a.121.1.1	100720,100721
2cxkA	95	55.50	b.1.18.1	131006
1uouA	474	56.42	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
3lsgA	103	57.13		
2c5wB	385	57.28	e.3.1.1	129958
2p22C	192	58.25		
1cqmA	101	60.23	d.58.14.1	39321
3gx1A	130	60.73		
1ldkA	396	61.13	a.118.17.1	73851
2wmfA	581	61.65		
1xrsA	516	63.40	c.1.19.4	115883
1zxaA	67	64.25		
2ajtA	500	64.30	b.43.2.2,c.85.1.2	126894,126895
3bddA	142	65.67		
1zq9A	285	67.14	c.66.1.24	125505
3jy6A	276	67.50		
2k6mS	67	67.50		
1dw0A	112	68.74	a.3.1.1	15911
1z1dA	103	69.03	a.4.5.16	124351
1i4aA	318	74.39	a.65.1.1	61681
2j07A	420	74.48	a.99.1.1,c.28.1.1	137891,137892
2wmhA	581	76.22		
2e7yA	280	76.84	d.157.1.7	146706
1yu5X	67	79.42	a.14.1.1	124039
2cz9A	350	81.20		
2a2fX	325	81.42		
1w3wA	327	81.76		
2yxlA	450	85.44		
1ovnA	248	86.35	a.71.1.1,c.47.1.7	93602,93603
1r1uA	106	86.54	a.4.5.5	104771
2a1vA	144	88.62	d.198.3.1	126019