# List of top-scoring protein chains for t06-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
3e61A	277	13.24		
1a6sA	87	13.45	a.61.1.4	18134
1tvnA	293	15.86	c.1.8.3	119360
1fviA	297	18.76	b.40.4.6,d.142.2.1	25364,41578
1zghA	260	19.10	b.46.1.1,c.65.1.1	125028,125029
2dfkA	402	19.38	a.87.1.1,b.55.1.1	145077,145078
2w3cA	577	19.78		
1k6xA	352	22.84	c.2.1.2	68238
2hehA	387	23.62		
1u2wA	122	28.05	a.4.5.5	119487
1ga3A	113	32.22	a.26.1.2	60411
3iayA	919	35.70		
1ngr	85	38.22		
1vhuA	211	42.52	c.50.1.2	100703
3hx3A	316	45.10		
1kk8B	139	48.41	a.39.1.5	77430
1z1dA	103	48.66	a.4.5.16	124351
3f1cA	246	49.87		
1xkzA	255	50.08	e.3.1.1	115426
2o37A	92	53.56		
2phpA	192	55.91	c.74.1.2	149474
2x8aA	274	59.56		
3efaA	147	61.59		
2pjpA	121	61.67		
1v32A	101	63.11	a.42.1.1	100277
2bpa2	175	63.95		
3draB	390	64.34		
1wdcB	156	65.21	a.39.1.5	17302
1ia0K	394	76.25	i.10.1.1	71167
3jy6A	276	76.27		
2vy8A	157	77.53		
1ljoA	77	78.15	b.38.1.1	73941
1zq9A	285	79.28	c.66.1.24	125505
1xrsA	516	80.11	c.1.19.4	115883
1d2vC	466	81.78		
2np5A	203	83.61	a.4.1.9,a.121.1.1	138424,138425
3lybA	165	87.34		
1vi9A	299	88.77	c.72.1.5	100750
2fozA	347	89.14