# List of top-scoring protein chains for t06-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1a6sA	87	10.82	a.61.1.4	18134
1tvnA	293	13.53	c.1.8.3	119360
3e61A	277	16.41		
1k6xA	352	19.48	c.2.1.2	68238
1v32A	101	20.25	a.42.1.1	100277
3bddA	142	21.98		
1z1dA	103	24.67	a.4.5.16	124351
1zq9A	285	29.61	c.66.1.24	125505
3jy6A	276	30.70		
1xrsA	516	37.15	c.1.19.4	115883
3edtB	283	38.69		
1wdcB	156	41.36	a.39.1.5	17302
1kk8B	139	44.21	a.39.1.5	77430
2r2iA	198	45.34		
2fozA	347	46.13		
2w3cA	577	49.02		
2pjpA	121	52.32		
2dfkA	402	53.46	a.87.1.1,b.55.1.1	145077,145078
2gokA	429	57.09	b.92.1.10,c.1.9.17	147145,147146
3lsgA	103	59.01		
2jhmF	218	60.09		
1ljoA	77	61.80	b.38.1.1	73941
3k0lA	162	63.02		
1z91A	147	63.14	a.4.5.28	124736
3bjaA	139	65.56		
2od5A	116	66.09	a.4.5.70	148736
2h7bA	105	66.28	a.277.1.1	147237
1wsuA	124	67.68	a.4.5.35,a.4.5.35	121245,121246
1s3jA	155	69.14	a.4.5.28	98437
1alvA	173	71.21	a.39.1.8	17370
2j0fA	482	71.50		
1wv2A	265	71.52	c.1.31.1	114910
1dwkA	156	72.44	a.35.1.4,d.72.1.1	17075,39606
2zfdA	226	74.28	a.39.1.5	154406
2bv6A	142	75.79	a.4.5.28	146218
3h4zA	568	78.60		
1dk0A	188	78.86	d.35.1.1	38530
3bj6A	152	80.47		
2vchA	480	82.68	c.87.1.10	152917
3ecoA	139	82.88		
2zntA	256	83.10