# List of top-scoring protein chains for t06-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r44A 331 1.829 1auiB 169 1.965 a.39.1.5 17325 3dfdA 157 3.743 3kluA 157 3.806 3i5gC 159 4.759 1cy5A 97 5.506 a.77.1.3 18430 1vrkA 148 6.039 k.21.1.1 46451 2o5gA 148 6.140 a.39.1.5 148598 3i7aA 281 6.163 1z1bA 356 6.296 d.10.1.4,d.163.1.1 124346,124347 1oxjA 173 7.241 a.60.1.2,a.118.1.13 87517,87518 1g8pA 350 7.552 c.37.1.20 60376 5palA 109 9.232 a.39.1.4 17215 1s1eA 224 9.716 a.39.1.5 112007 2remA 193 9.944 3l9uA 201 9.99 1mvwB 145 12.37 i.15.1.1 79524 1qwgA 251 12.93 c.1.27.1 96473 1pvaA 110 14.87 a.39.1.4 17207 2aifA 135 16.39 d.79.3.1 146055 2bl0C 142 17.57 1zh5A 195 17.96 a.4.5.46,d.58.7.1 125073,125074 1r1tA 122 18.15 a.4.5.5 104769 3etfA 462 18.53 2p5tB 253 18.79 1tigA 94 19.50 d.68.1.1 39566 1uhnA 189 20.47 a.39.1.5 99399 3if5A 456 20.97 3f45A 109 21.24 1tbfA 347 23.22 a.211.1.2 106743 2f3yA 148 23.23 a.39.1.5 146994 3it4B 205 24.62 3e96A 316 24.74 3bi8A 291 25.19 3hc8A 324 26.42 2r2iA 198 26.61 1tig 94 27.31 1wdcB 156 27.94 a.39.1.5 17302 2nuwA 288 28.50 2f7tA 227 30.24 1rwyA 109 30.89 a.39.1.4 98002 2pvbA 107 31.22 a.39.1.4 17205 3i5qA 252 31.39 2pgeA 377 31.67 1qtxA 148 32.78 k.21.1.1 88375 1ggzA 148 33.45 a.39.1.5 70176 1exrA 148 37.00 a.39.1.5 17299 3f2kA 226 37.66 2v4iB 213 38.14 4cpvA 108 38.14 a.39.1.4 17198 3fluA 297 38.67 3fwbA 161 39.51 2qacA 146 39.89 2pjuA 225 40.21 c.92.3.1 149579 1uxtA 501 40.46 c.82.1.1 108125 1vh0A 161 40.80 c.116.1.3 100626 1so2A 420 41.25 a.211.1.2 98936 2hi0A 240 41.29 3iuoA 122 41.81 3hh0A 146 42.78 2bl0B 145 42.92 1w3iA 293 43.02 c.1.10.1 109152 1vz0A 230 43.28 a.4.14.1,d.268.1.1 108929,108930 3ed5A 238 44.13 1s6cA 183 44.28 a.39.1.5 98594 3h93A 192 44.93 2aaoA 166 45.30 3kzqA 208 45.88 2ovkC 159 46.19 1rroA 108 46.52 a.39.1.4 17195 3ih8A 456 47.23 2r8wA 332 47.37 2gv5A 161 47.86 3f6oA 118 48.25 2obhA 143 49.20 a.39.1.5 148716 1y7qA 98 49.94 a.28.3.2 122714 3kloA 225 50.35 2a1rA 430 50.93 2jk8A 302 51.42 2pcqA 283 52.67 1xtyA 120 53.64 3ik4A 365 53.94 2g9wA 138 54.21 a.4.5.39 147097 2d5rA 252 54.25 c.55.3.9 146466 1gvnB 287 54.79 c.37.1.21 76354 3m9uA 309 55.56 3euvB 427 57.73 1tn6B 437 59.04 a.102.4.3 112528 1uocA 289 59.56 c.55.3.9 99686 1kr7A 110 60.65 a.1.1.4 72890 1rlr 761 61.13 2sasA 185 61.47 a.39.1.5 17258 2vc6A 292 61.98 3c7mA 195 62.01 1mdl 359 62.49 2yskA 145 64.07 1pq1A 196 64.33 f.1.4.1 94986 2ax4A 198 64.87 3cnhA 200 66.78 3i0tA 179 66.95 3fkkA 309 69.20 2vebA 195 69.46 2qniA 219 70.28 1lucB 324 70.37 c.1.16.1 29548 1wdcC 156 71.35 a.39.1.5 17317 1rh1A 511 71.95 b.110.1.1,f.1.1.1 97462,97463 3eb2A 300 72.26 3gp2A 147 72.32 1g8iA 190 72.53 a.39.1.5 60363 3fkrA 309 73.05 1kk8B 139 73.53 a.39.1.5 77430 3ff5A 54 73.88 2znmA 195 74.24 1bedA 181 77.15 c.47.1.13 90330 2ps2A 371 77.28 2pmqA 377 77.46 1ub0A 258 77.50 c.72.1.2 88394 3cz7A 364 77.97 1mzhA 225 78.19 c.1.10.1 79698 3kevA 199 78.27 3gykA 175 79.97 1c3pA 375 80.38 c.42.1.2 32606 1vg0A 650 80.61 c.3.1.3,d.16.1.6 108596,108597 3m5vA 301 81.42 1rxqA 178 82.43 a.213.1.1 105118 2xapA 761 82.60 1lj2A 110 82.60 h.1.13.2 73926 1lvaA 258 84.58 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2x1yA 761 84.64 2fkiA 126 85.98 d.198.3.1 133657 2qsfX 171 87.60