Best Alignments for T0555

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1owlA	8.4580e+00	1owlA/T0555-1owlA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.99.1.1 c.28.1.1
3lsgA	9.7283e+00	3lsgA/T0555-3lsgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qorA	9.9687e+00	2qorA/T0555-2qorA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1qnf	1.0923e+01	1qnf/T0555-1qnf-t04-local-alpha-1.2+0.9-adpstyle5.a2m
1a6sA	1.2219e+01	1a6sA/T0555-1a6sA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.61.1.4
1u2wA	1.3186e+01	1u2wA/T0555-1u2wA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.5
2fozA	1.5541e+01	2fozA/T0555-2fozA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xo5A	1.7203e+01	1xo5A/T0555-1xo5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
2od5A	1.8484e+01	2od5A/T0555-2od5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.5.70
1uhnA	2.4633e+01	1uhnA/T0555-1uhnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1s1eA	2.4997e+01	1s1eA/T0555-1s1eA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.5
1rec	2.7593e+01	1rec/T0555-1rec-t04-global-alpha-1.2+0.9-adpstyle5.a2m
3k7mX	3.1619e+01	3k7mX/T0555-3k7mX-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1wdcB	3.3067e+01	1wdcB/T0555-1wdcB-t04-global-alpha-1.2+0.9-adpstyle5.a2m	a.39.1.5
1tezA	3.7129e+01	1tezA/T0555-1tezA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.99.1.1 c.28.1.1
1bl0A	4.1236e+01	1bl0A/T0555-1bl0A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.4.1.8 a.4.1.8
1jdhA	4.1271e+01	1jdhA/T0555-1jdhA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1dw0A	4.1665e+01	1dw0A/T0555-1dw0A-t04-global-alpha-1.2+0.9-adpstyle5.a2m	a.3.1.1
1k94A	4.2348e+01	1k94A/T0555-1k94A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	a.39.1.8
3fwaA	4.3524e+01	3fwaA/T0555-3fwaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001