# List of top-scoring protein chains for T0555.t04-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1r22A	122	15.16	a.4.5.5	104777
1r1tA	122	33.17	a.4.5.5	104769
3ledA	392	38.43		
2h7bA	105	51.64	a.277.1.1	147237
2knhA	103	52.05		
3hrsA	214	59.47		
1pthA	576	61.79	a.93.1.2,g.3.11.1	18705,44248
1ebvA	551	62.70	a.93.1.2,g.3.11.1	18709,44252
2od5A	116	70.89	a.4.5.70	148736
1u67A	600	72.30	a.93.1.2,g.3.11.1	107697,107698
1idrA	136	75.05	a.1.1.1	62301
2oyuP	600	76.12	a.93.1.2,g.3.11.1	149080,149081
1igzA	576	76.87	a.93.1.2,g.3.11.1	66138,66139
1eqgA	580	76.94	a.93.1.2,g.3.11.1	59487,59488
1prhA	554	76.98	a.93.1.2,g.3.11.1	18710,44253
1q4gA	553	77.55	a.93.1.2,g.3.11.1	95789,95790
1ht8A	551	77.67	a.93.1.2,g.3.11.1	61248,61249
1yifA	533	79.62	b.29.1.23,b.67.2.1	123283,123284