# List of top-scoring protein chains for t04-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1owlA	484	0.6430	a.99.1.1,c.28.1.1	93647,93648
1qnf	484	0.8991		
2qorA	204	2.014		
1u2wA	122	2.431	a.4.5.5	119487
2fozA	347	3.549		
3lsgA	103	3.789		
1a6sA	87	9.204	a.61.1.4	18134
1tezA	474	9.247	a.99.1.1,c.28.1.1	112409,112410
3k7mX	431	11.53		
3di5A	168	12.07		
2od5A	116	13.35	a.4.5.70	148736
3fwaA	497	16.60		
2j0fA	482	17.21		
1xo5A	183	17.59	a.39.1.5	115680
1bl0A	129	19.23	a.4.1.8,a.4.1.8	16053,16054
3ik4A	365	21.17		
1o7dA	298	21.73	c.6.2.1	86641
1rec	201	22.88		
2pjpA	121	23.72		
1uhnA	189	23.96	a.39.1.5	99399
1s1eA	224	26.37	a.39.1.5	112007
1f21A	155	26.70	c.55.3.1	33550
1uouA	474	26.92	a.46.2.1,c.27.1.1,d.41.3.1	99706,99707,99708
2aamA	309	27.35	c.1.8.15	126489
2h7bA	105	30.26	a.277.1.1	147237
1gu2A	124	32.27	a.3.1.1	76348
2vsoE	289	33.47		
1np8A	159	33.99	a.39.1.8	92022
1jl1A	155	36.73	c.55.3.1	66821
1dw0A	112	37.06	a.3.1.1	15911
1zi8A	236	37.07		
1gxjA	186	37.43	d.215.1.1	70707
1gt1A	159	38.66	b.60.1.1	90515
2ajtA	500	39.53	b.43.2.2,c.85.1.2	126894,126895
1dwkA	156	39.61	a.35.1.4,d.72.1.1	17075,39606
3gpgA	168	40.28		
1wsuA	124	40.59	a.4.5.35,a.4.5.35	121245,121246
1k94A	165	41.14	a.39.1.8	68333
3fw9A	495	41.29		
1obpA	159	42.55	b.60.1.1	27092
3dxfA	299	43.02		
1sfxA	109	44.28	a.4.5.50	105505
1u8bA	133	45.49		
2i7aA	174	46.12		
5palA	109	47.65	a.39.1.4	17215
1yzxA	226	49.44		
1w53A	84	49.81	a.186.1.2	109175
1rkpA	326	50.26	a.211.1.2	97620
1i4aA	318	50.97	a.65.1.1	61681
2jd3A	130	51.17		
1r1uA	106	53.01	a.4.5.5	104771
2ou6A	190	53.61	a.213.1.2	149020
4cpvA	108	54.23	a.39.1.4	17198
2dbnA	461	55.54		
2fkiA	126	56.06	d.198.3.1	133657
3a42A	295	56.82		
2phpA	192	57.01	c.74.1.2	149474
1r1tA	122	58.18	a.4.5.5	104769
2wm3A	299	58.68		
1smtA	122	59.36	a.4.5.5	16109
2dejA	350	60.71		
2j07A	420	64.40	a.99.1.1,c.28.1.1	137891,137892
1wovA	250	64.54	a.132.1.1	121124
1rxqA	178	65.11	a.213.1.1	105118
2oqgA	114	65.46		
3cu5A	141	65.93		
2bzeA	153	68.91	b.34.21.1	146224
1rroA	108	70.48	a.39.1.4	17195
1w3wA	327	76.91		
3a46A	289	77.11		
2rn2	155	77.57		
1u9tA	354	79.52	e.62.1.1	119651
2x5yA	173	80.78		
2dznA	228	81.42	d.211.1.1	146617
1xszA	356	81.53	a.118.3.1,d.129.9.1	116005,116006
1f4qA	165	83.22	a.39.1.8	17360
2woeA	299	83.33		
1wdcB	156	85.30	a.39.1.5	17302
1gg3A	279	89.99	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615