# List of top-scoring protein chains for t04-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1owlA 484 0.6324 a.99.1.1,c.28.1.1 93647,93648 1qnf 484 0.7892 1a6sA 87 2.019 a.61.1.4 18134 3lsgA 103 2.747 1u2wA 122 3.171 a.4.5.5 119487 2qorA 204 4.065 2fozA 347 6.139 1tezA 474 6.770 a.99.1.1,c.28.1.1 112409,112410 3fwaA 497 8.345 2od5A 116 10.48 a.4.5.70 148736 1xo5A 183 10.83 a.39.1.5 115680 1np8A 159 17.46 a.39.1.8 92022 3k7mX 431 18.42 2h7bA 105 20.29 a.277.1.1 147237 3ik4A 365 20.96 2j0fA 482 22.45 3fw9A 495 22.55 1uouA 474 26.36 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1uhnA 189 28.51 a.39.1.5 99399 1bl0A 129 29.00 a.4.1.8,a.4.1.8 16053,16054 1dw0A 112 29.74 a.3.1.1 15911 1gxjA 186 30.23 d.215.1.1 70707 1wsuA 124 31.25 a.4.5.35,a.4.5.35 121245,121246 1rec 201 33.35 2jd3A 130 36.47 1u8bA 133 36.50 1s1eA 224 36.65 a.39.1.5 112007 2pjpA 121 38.10 3bqyA 209 38.63 1yakA 263 38.75 a.132.1.3 122833 2i7aA 174 38.77 1wovA 250 39.74 a.132.1.1 121124 3gpgA 168 40.04 3dxfA 299 40.98 3di5A 168 41.21 1gu2A 124 41.46 a.3.1.1 76348 1k94A 165 42.74 a.39.1.8 68333 1lvaA 258 44.17 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2ou6A 190 44.25 a.213.1.2 149020 1xszA 356 44.54 a.118.3.1,d.129.9.1 116005,116006 1smtA 122 45.07 a.4.5.5 16109 2dejA 350 45.41 1wdcB 156 46.08 a.39.1.5 17302 1gt1A 159 46.35 b.60.1.1 90515 2aamA 309 46.39 c.1.8.15 126489 1r1tA 122 47.01 a.4.5.5 104769 2wm3A 299 48.55 1o7dA 298 50.80 c.6.2.1 86641 1rxqA 178 50.92 a.213.1.1 105118 3fw7A 498 53.15 2ajtA 500 53.17 b.43.2.2,c.85.1.2 126894,126895 1obpA 159 53.79 b.60.1.1 27092 1alvA 173 56.08 a.39.1.8 17370 1sfxA 109 56.51 a.4.5.50 105505 2vsoE 289 58.17 1rroA 108 60.66 a.39.1.4 17195 1yzxA 226 61.11 1f21A 155 61.85 c.55.3.1 33550 4cpvA 108 63.03 a.39.1.4 17198 3c1vA 113 63.15 a.39.1.2 155867 3fw8A 495 63.92 1i4aA 318 64.58 a.65.1.1 61681 3gbgA 276 65.16 1j2mA 99 65.61 a.165.1.1 84018 1zi8A 236 65.79 3cu5A 141 65.95 1ax8A 146 66.98 a.26.1.1 16844 1f4qA 165 68.25 a.39.1.8 17360 2fkiA 126 68.51 d.198.3.1 133657 5palA 109 70.08 a.39.1.4 17215 1jl1A 155 70.45 c.55.3.1 66821 1r1uA 106 71.71 a.4.5.5 104771 3edtB 283 73.33 2j07A 420 73.49 a.99.1.1,c.28.1.1 137891,137892 2q91A 101 73.91 a.39.1.2 150135 1y1xA 191 75.75 a.39.1.8 116374 1w53A 84 75.97 a.186.1.2 109175 1dpuA 99 76.01 a.4.5.16 16150 1w3wA 327 76.11 2fjuB 799 76.79 a.39.1.7,b.7.1.1,b.55.1.1,c.1.18.1 145170,145171,145172,145173 2bzeA 153 76.99 b.34.21.1 146224 2dxqA 150 78.30 2woeA 299 79.11 1dwkA 156 81.73 a.35.1.4,d.72.1.1 17075,39606 2jrmA 65 82.78 3b9qA 302 83.59 3i4kA 383 83.99 2wq7A 543 86.03 2p5iA 288 86.44 d.104.1.3 149248