# List of top-scoring protein chains for t04-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1a6sA 87 0.4606 a.61.1.4 18134 2fozA 347 0.8403 1xo5A 183 0.9480 a.39.1.5 115680 3lsgA 103 1.344 1qnf 484 2.010 1u2wA 122 2.273 a.4.5.5 119487 1owlA 484 2.298 a.99.1.1,c.28.1.1 93647,93648 1s1eA 224 2.581 a.39.1.5 112007 1uhnA 189 2.639 a.39.1.5 99399 3k7mX 431 2.880 2pjpA 121 2.948 3c1vA 113 3.955 a.39.1.2 155867 2r2iA 198 4.504 1auiB 169 4.651 a.39.1.5 17325 1alvA 173 5.411 a.39.1.8 17370 2od5A 116 5.419 a.4.5.70 148736 1g8iA 190 5.710 a.39.1.5 60363 2qorA 204 5.846 2q91A 101 6.310 a.39.1.2 150135 1k94A 165 6.397 a.39.1.8 68333 3ik4A 365 6.658 1wsuA 124 9.129 a.4.5.35,a.4.5.35 121245,121246 1np8A 159 9.773 a.39.1.8 92022 2woeA 299 10.61 1f4qA 165 10.61 a.39.1.8 17360 2i7aA 174 10.78 2j0fA 482 10.91 1u8bA 133 11.25 1wdcB 156 12.00 a.39.1.5 17302 1yakA 263 12.06 a.132.1.3 122833 3i4kA 383 12.13 1dw0A 112 12.47 a.3.1.1 15911 1pvaA 110 12.90 a.39.1.4 17207 1y1xA 191 13.29 a.39.1.8 116374 1uouA 474 13.76 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 2ce7A 476 14.06 a.269.1.1,c.37.1.20 130312,130313 1hqvA 191 15.45 a.39.1.8 61160 2pvbA 107 15.58 a.39.1.4 17205 1sfxA 109 15.77 a.4.5.50 105505 1ggzA 148 16.37 a.39.1.5 70176 2obhA 143 16.56 a.39.1.5 148716 1exrA 148 17.02 a.39.1.5 17299 5palA 109 17.31 a.39.1.4 17215 1rxqA 178 17.51 a.213.1.1 105118 3di5A 168 17.99 3hoaA 509 19.11 1rroA 108 19.18 a.39.1.4 17195 1qlsA 99 19.91 a.39.1.2 17185 1gg3A 279 20.13 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2zkzA 99 20.31 2hpsA 186 21.30 2zfdA 226 21.60 a.39.1.5 154406 1dwkA 156 21.66 a.35.1.4,d.72.1.1 17075,39606 1w3wA 327 21.92 4cpvA 108 21.95 a.39.1.4 17198 1lvaA 258 22.50 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2wocA 299 22.66 1djxB 624 23.00 a.39.1.7,b.7.1.1,c.1.18.1 17343,23160,29588 1z72A 225 24.02 a.132.1.3 124583 2ct9A 208 25.00 3gpgA 168 25.44 1rvkA 382 25.77 c.1.11.2,d.54.1.1 97928,97929 2aaoA 166 26.70 3i6tA 381 27.37 1rec 201 27.61 1yzxA 226 27.83 3i53A 332 28.33 1bl0A 129 29.05 a.4.1.8,a.4.1.8 16053,16054 2aajA 130 29.80 d.80.1.6 126481 1i4aA 318 30.47 a.65.1.1 61681 1rwyA 109 31.31 a.39.1.4 98002 3danA 473 31.51 1gu2A 124 31.70 a.3.1.1 76348 1smtA 122 31.74 a.4.5.5 16109 1a4pA 96 31.98 a.39.1.2 17176 2h7bA 105 32.87 a.277.1.1 147237 1w6tA 444 34.05 c.1.11.1,d.54.1.1 120670,120671 1w7jB 151 35.16 a.39.1.5 120690 1xvjA 109 36.86 3gwzA 369 37.07 1bqgA 451 37.16 c.1.11.2,d.54.1.1 29217,38861 2f3yA 148 39.34 a.39.1.5 146994 1gxjA 186 40.27 d.215.1.1 70707 2zndA 172 41.83 1ppjB 439 42.24 d.185.1.1,d.185.1.1 104254,104255 1xszA 356 42.65 a.118.3.1,d.129.9.1 116005,116006 1tezA 474 42.84 a.99.1.1,c.28.1.1 112409,112410 3gbgA 276 43.12 104lA 166 43.35 d.2.1.3 36969 2bzeA 153 44.35 b.34.21.1 146224 1e8aA 91 44.81 a.39.1.2 17188 3dxfA 299 45.45 2wm3A 299 45.83 1z91A 147 45.87 a.4.5.28 124736 1gt1A 159 45.92 b.60.1.1 90515 3lstA 348 46.40 2sasA 185 47.87 a.39.1.5 17258 3e3rA 204 49.18 2zhjA 322 50.26 2aamA 309 50.86 c.1.8.15 126489 1r1tA 122 52.89 a.4.5.5 104769 1qzpA 68 53.40 a.14.1.1 96654 2pceA 386 55.49 3eoqA 406 55.63 1axnA 323 56.06 a.65.1.1 18149 2fkiA 126 56.37 d.198.3.1 133657 2f2eA 146 56.98 a.4.5.69 132808 1obpA 159 57.44 b.60.1.1 27092 3cu5A 141 57.46 1m45A 148 59.03 a.39.1.5 78598 1yu5X 67 60.84 a.14.1.1 124039 1br1B 150 61.49 a.39.1.5 17309 1gx3A 284 61.62 d.3.1.5 70678 1ujsA 88 62.73 a.14.1.1 99467 1s3jA 155 64.09 a.4.5.28 98437 1yu8X 67 64.37 a.14.1.1 124044 1rkpA 326 64.70 a.211.1.2 97620 3bigA 338 66.38 2scpA 174 66.41 a.39.1.5 17256 3mklA 120 66.55 1zi8A 236 66.97 1r1uA 106 68.07 a.4.5.5 104771 1sqgA 429 68.68 a.79.1.3,c.66.1.38 105912,105913 3dgbA 382 68.80 3f45A 109 69.00 2r8tA 338 69.11 2nxwA 565 70.95 1maz 221 71.34 1sl8A 191 72.18 a.39.1.5 112099 3c7jA 237 73.11 2fbiA 142 73.50 a.4.5.28 133246 1s6cA 183 73.75 a.39.1.5 98594 3d5kA 474 73.82 2q3pA 112 73.92 d.58.4.4 139798 2k6mS 67 74.23 2ethA 154 74.32 a.4.5.28 132358 2bl0B 145 74.98 1mogA 67 76.89 d.230.2.1 85034 2jrmA 65 78.17 2vvmA 495 78.52 1kk8B 139 79.55 a.39.1.5 77430 2j5aA 110 79.92 d.58.14.1 147886 1fx7A 230 83.07 a.4.5.24,a.76.1.1,b.34.1.2 60088,60089,60090 1rioA 98 85.18 a.35.1.2 97513 2jd3A 130 85.20 1topA 162 85.37 a.39.1.5 17223 2db9A 149 85.82 b.34.21.1 146482 3i6eA 385 86.43 2ptsA 462 86.98 2vk8A 563 87.67 1v1rA 400 88.26 c.36.1.11 108272 2vofA 157 88.33 1mvwC 147 89.16 i.15.1.1 79525 3lotA 314 89.69 3fvdA 378 89.72