# List of top-scoring protein chains for t04-w0.5-1-o_notor-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1owlA	484	0.9498	a.99.1.1,c.28.1.1	93647,93648
1qnf	484	1.589		
2qorA	204	2.490		
1u2wA	122	3.588	a.4.5.5	119487
3lsgA	103	4.461		
1tezA	474	9.047	a.99.1.1,c.28.1.1	112409,112410
2od5A	116	9.249	a.4.5.70	148736
1f21A	155	10.78	c.55.3.1	33550
1jl1A	155	11.56	c.55.3.1	66821
1a6sA	87	12.52	a.61.1.4	18134
2fozA	347	13.51		
2j0fA	482	14.79		
3k7mX	431	15.24		
2w3cA	577	16.75		
1bl0A	129	18.52	a.4.1.8,a.4.1.8	16053,16054
2dbnA	461	18.71		
3fwaA	497	19.73		
1u8bA	133	22.47		
3ik4A	365	23.28		
2rn2	155	25.34		
2jd3A	130	27.28		
2ajtA	500	27.83	b.43.2.2,c.85.1.2	126894,126895
2aamA	309	30.94	c.1.8.15	126489
2x5yA	173	30.99		
1s1eA	224	31.83	a.39.1.5	112007
1o7dA	298	32.63	c.6.2.1	86641
1xo5A	183	33.47	a.39.1.5	115680
1gu2A	124	33.56	a.3.1.1	76348
1hkqA	132	34.82	a.4.5.10	83555
1rec	201	36.46		
2dejA	350	38.75		
1wovA	250	40.00	a.132.1.1	121124
3gpgA	168	40.23		
1gxjA	186	40.26	d.215.1.1	70707
2phpA	192	41.29	c.74.1.2	149474
1k94A	165	41.50	a.39.1.8	68333
1w3wA	327	43.93		
1np8A	159	44.07	a.39.1.8	92022
2ou6A	190	44.53	a.213.1.2	149020
1uhnA	189	45.31	a.39.1.5	99399
2pjpA	121	46.52		
1sqgA	429	46.58	a.79.1.3,c.66.1.38	105912,105913
3dxfA	299	46.66		
1r1uA	106	47.15	a.4.5.5	104771
2h7bA	105	47.19	a.277.1.1	147237
1zi8A	236	48.12		
1w53A	84	48.75	a.186.1.2	109175
3fw9A	495	52.21		
1bj7A	156	55.49	b.60.1.1	27113
1i4aA	318	55.68	a.65.1.1	61681
2wm3A	299	57.30		
1jl2A	156	57.47	c.55.3.1	66822
1jf2A	195	58.53	a.39.1.5	62930
3di5A	168	60.95		
1wdcB	156	61.72	a.39.1.5	17302
1sfxA	109	61.98	a.4.5.50	105505
1alvA	173	63.64	a.39.1.8	17370
1zr5A	214	67.71	c.50.1.2	125525
1f4qA	165	69.29	a.39.1.8	17360
1yzxA	226	69.96		
1rxqA	178	72.23	a.213.1.1	105118
2fjuB	799	72.64	a.39.1.7,b.7.1.1,b.55.1.1,c.1.18.1	145170,145171,145172,145173
1j2mA	99	73.32	a.165.1.1	84018
1dw0A	112	74.44	a.3.1.1	15911
1xszA	356	74.51	a.118.3.1,d.129.9.1	116005,116006
3b9qA	302	75.15		
2oqgA	114	76.42		
1ojhA	65	76.59	a.214.1.1	103976
3a46A	289	78.46		
1obpA	159	80.04	b.60.1.1	27092
2wq7A	543	80.05		
3bqyA	209	82.25		
1smtA	122	83.84	a.4.5.5	16109
3a42A	295	86.51		
1gg3A	279	86.66	a.11.2.1,b.55.1.5,d.15.1.4	16372,27007,37615
1r1tA	122	86.84	a.4.5.5	104769
3b49A	211	87.49		
1rroA	108	88.58	a.39.1.4	17195
2ptsA	462	88.96		
1gt1A	159	89.14	b.60.1.1	90515
1rp3A	239	89.47	a.4.13.1,a.4.13.2,a.177.1.1	97678,97679,97680