# List of top-scoring protein chains for t04-w0.5-1-near-backbone-11-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2qorA	204	4.434		
2fozA	347	16.14		
2gh9A	386	20.80		
1xo5A	183	20.86	a.39.1.5	115680
3bqyA	209	22.30		
3jyrA	396	26.11		
3k7mX	431	26.36		
2pjpA	121	28.35		
3lsgA	103	30.43		
2dbnA	461	31.00		
3kjtA	372	32.58		
3gpgA	168	32.60		
2od5A	116	33.90	a.4.5.70	148736
1rec	201	34.79		
1a6sA	87	35.98	a.61.1.4	18134
1iuqA	367	37.09	c.112.1.1	90703
3iayA	919	37.67		
3lupA	285	40.15		
2dr3A	247	54.18		
2nq5A	755	54.82		
2aamA	309	55.73	c.1.8.15	126489
2rqkA	141	56.67		
1bl0A	129	58.83	a.4.1.8,a.4.1.8	16053,16054
3gbvA	304	58.99		
5palA	109	59.48	a.39.1.4	17215
4cpvA	108	61.11	a.39.1.4	17198
2j5aA	110	63.43	d.58.14.1	147886
2r2iA	198	64.19		
1tjyA	316	67.41	c.93.1.1	107062
1u2wA	122	68.41	a.4.5.5	119487
2ou6A	190	68.65	a.213.1.2	149020
1jftA	340	71.34	a.35.1.5,c.93.1.1	66652,66653
2fkiA	126	73.47	d.198.3.1	133657
1rroA	108	73.94	a.39.1.4	17195
2p5iA	288	74.14	d.104.1.3	149248
3h0lA	478	77.24		
1sedA	117	80.26	a.219.1.1	105449
1o7dA	298	83.58	c.6.2.1	86641
2aajA	130	83.61	d.80.1.6	126481
3lotA	314	84.22		
2bl0B	145	84.74		
1rxqA	178	85.60	a.213.1.1	105118
1wovA	250	86.86	a.132.1.1	121124
1gzsB	165	88.28	a.168.1.1	76425
1oxjA	173	88.42	a.60.1.2,a.118.1.13	87517,87518