# List of top-scoring protein chains for t04-w0.5-1-n_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1owlA 484 0.8609 a.99.1.1,c.28.1.1 93647,93648 1u2wA 122 1.324 a.4.5.5 119487 1qnf 484 1.335 2qorA 204 1.625 3lsgA 103 1.646 2fozA 347 3.193 2od5A 116 5.739 a.4.5.70 148736 1a6sA 87 5.823 a.61.1.4 18134 1xo5A 183 7.960 a.39.1.5 115680 1bl0A 129 9.479 a.4.1.8,a.4.1.8 16053,16054 2j0fA 482 9.545 1s1eA 224 12.22 a.39.1.5 112007 1dwkA 156 13.13 a.35.1.4,d.72.1.1 17075,39606 2pjpA 121 13.23 1uhnA 189 14.93 a.39.1.5 99399 1f21A 155 15.31 c.55.3.1 33550 1tezA 474 16.13 a.99.1.1,c.28.1.1 112409,112410 1yzxA 226 17.73 3k7mX 431 18.14 3fwaA 497 19.88 1wsuA 124 20.78 a.4.5.35,a.4.5.35 121245,121246 1gxjA 186 22.06 d.215.1.1 70707 1hkqA 132 22.77 a.4.5.10 83555 1o7dA 298 22.98 c.6.2.1 86641 1wdcB 156 23.68 a.39.1.5 17302 3ik4A 365 24.29 1u8bA 133 25.47 1sfxA 109 27.28 a.4.5.50 105505 1jl1A 155 27.62 c.55.3.1 66821 2dbnA 461 28.22 1r1uA 106 28.97 a.4.5.5 104771 1rec 201 29.68 1wovA 250 29.86 a.132.1.1 121124 2i7aA 174 30.41 2aamA 309 30.45 c.1.8.15 126489 1uouA 474 30.46 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1gu2A 124 31.16 a.3.1.1 76348 2dejA 350 31.20 2rn2 155 35.22 1smtA 122 36.53 a.4.5.5 16109 1r1tA 122 38.50 a.4.5.5 104769 2oqgA 114 39.31 1k94A 165 39.59 a.39.1.8 68333 3dxfA 299 41.18 2h7bA 105 42.64 a.277.1.1 147237 1lvaA 258 42.82 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2vsoE 289 42.89 3gpgA 168 43.73 1auiB 169 44.83 a.39.1.5 17325 3iayA 919 47.83 2bzeA 153 48.85 b.34.21.1 146224 2wm3A 299 49.65 2ct9A 208 50.99 1dw0A 112 53.35 a.3.1.1 15911 3fw9A 495 53.42 2woeA 299 54.93 1np8A 159 56.09 a.39.1.8 92022 3eyyA 145 59.00 2ptsA 462 61.18 3gbgA 276 61.26 5palA 109 61.42 a.39.1.4 17215 2imfA 203 61.60 1ax8A 146 63.13 a.26.1.1 16844 2fkiA 126 66.06 d.198.3.1 133657 1g8iA 190 66.39 a.39.1.5 60363 2ajtA 500 66.96 b.43.2.2,c.85.1.2 126894,126895 4cpvA 108 67.83 a.39.1.4 17198 2fjuB 799 69.07 a.39.1.7,b.7.1.1,b.55.1.1,c.1.18.1 145170,145171,145172,145173 2ou6A 190 74.73 a.213.1.2 149020 2zkzA 99 74.91 1pieA 419 80.62 d.14.1.5,d.58.26.7 94706,94707 2j5aA 110 81.18 d.58.14.1 147886 1gg3A 279 83.19 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1obpA 159 83.70 b.60.1.1 27092 1u9tA 354 85.06 e.62.1.1 119651 1alvA 173 85.08 a.39.1.8 17370 3mklA 120 85.63 1w53A 84 85.82 a.186.1.2 109175 3di5A 168 85.99 3f6wA 83 86.66 3kw6A 78 86.83 2vugA 389 89.29