# List of top-scoring protein chains for t04-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 3dxfA 299 0.4473 2qorA 204 1.235 3lsgA 103 2.298 3fwaA 497 2.558 2obhA 143 2.658 a.39.1.5 148716 2i7aA 174 2.763 1sl8A 191 3.622 a.39.1.5 112099 1owlA 484 3.884 a.99.1.1,c.28.1.1 93647,93648 2o56A 407 4.146 1jndA 420 4.580 c.1.8.5,d.26.3.1 71757,71758 2fozA 347 4.647 1zbpA 273 6.341 e.61.1.1 124861 1u2wA 122 6.363 a.4.5.5 119487 2dznA 228 6.811 d.211.1.1 146617 1ux5A 411 6.880 a.207.1.1 100144 1o7dA 298 7.284 c.6.2.1 86641 2scpA 174 7.455 a.39.1.5 17256 1wdcB 156 7.652 a.39.1.5 17302 1s1eA 224 9.209 a.39.1.5 112007 1hp1A 516 9.525 d.114.1.1,d.159.1.2 70976,70977 2gv5A 161 10.26 1jf2A 195 10.51 a.39.1.5 62930 2hpsA 186 12.58 3lfrA 136 12.83 3fy4A 537 13.01 2vvlA 495 13.75 1m45A 148 14.13 a.39.1.5 78598 2f3yA 148 14.59 a.39.1.5 146994 2az4A 429 14.94 d.157.1.10 127597 1bd8A 156 16.03 d.211.1.1 19157 3k7mX 431 16.19 1rvkA 382 16.67 c.1.11.2,d.54.1.1 97928,97929 1zcdA 388 16.77 1rroA 108 17.05 a.39.1.4 17195 1udcA 338 17.28 c.2.1.2 29785 3goyA 193 17.30 3fw8A 495 17.84 1y1xA 191 18.02 a.39.1.8 116374 3c96A 415 18.74 c.3.1.2,d.16.1.2 156122,156123 2od5A 116 18.83 a.4.5.70 148736 3i5gC 159 18.86 2qlzA 232 19.41 3k0sA 799 19.58 1g8iA 190 19.78 a.39.1.5 60363 2vvmA 495 20.61 3hxrA 761 21.02 2vx5A 396 22.30 1pfoA 500 22.77 f.9.1.1 43826 2j0fA 482 22.87 2rfmA 192 22.96 1exrA 148 23.22 a.39.1.5 17299 2ou6A 190 24.39 a.213.1.2 149020 1clc 639 24.78 2o5gA 148 25.15 a.39.1.5 148598 1a0iA 348 25.17 b.40.4.6,d.142.2.1 25363,41577 1h5uA 842 26.30 c.87.1.4 60655 1mvwC 147 26.39 i.15.1.1 79525 1z6gA 218 26.43 3iwoA 358 27.11 3iwiA 361 29.27 1tf4A 605 29.41 a.102.1.2,b.2.2.2 18827,22393 1wdcC 156 29.60 a.39.1.5 17317 1a6sA 87 30.18 a.61.1.4 18134 1clcA 639 30.31 a.102.1.2,b.1.18.2 18835,21872 3a46A 289 30.37 1qnf 484 31.10 3htzA 464 34.18 2pjpA 121 34.40 3ixbA 358 35.30 1udbA 338 36.48 c.2.1.2 29787 1bl0A 129 36.51 a.4.1.8,a.4.1.8 16053,16054 2q6fA 309 36.57 1t08A 519 37.29 a.118.1.1 112190 1rec 201 38.18 1db3A 372 38.89 c.2.1.2 29813 1ux8A 132 39.36 a.1.1.1 113449 2dylA 318 39.48 2ip2A 334 39.51 1ulyA 192 39.66 a.4.5.58 113297 3c1vA 113 40.33 a.39.1.2 155867 1nqkA 381 40.47 c.1.16.4 92050 3fozA 316 40.70 1hkqA 132 41.35 a.4.5.10 83555 1e9rA 437 41.94 c.37.1.11 64827 1f21A 155 42.04 c.55.3.1 33550 1pjr 724 43.18 1tezA 474 43.21 a.99.1.1,c.28.1.1 112409,112410 1efyA 350 43.98 a.41.1.1,d.166.1.2 17413,42275 2bjkA 516 44.86 1xo5A 183 44.87 a.39.1.5 115680 1lf6A 684 45.61 a.102.1.5,b.30.5.5 77918,77919 1xszA 356 46.50 a.118.3.1,d.129.9.1 116005,116006 3k9tA 435 47.80 1wsuA 124 48.52 a.4.5.35,a.4.5.35 121245,121246 2gl5A 410 48.72 c.1.11.2,d.54.1.1 135336,135337 1gxjA 186 49.48 d.215.1.1 70707 2b1eA 564 49.89 2jabA 136 50.13 1jl1A 155 51.31 c.55.3.1 66821 1j6wA 175 52.46 d.185.1.2 62663 3fnrA 464 52.84 1eovA 487 53.87 b.40.4.1,d.104.1.1 25239,40760 2q91A 101 54.05 a.39.1.2 150135 1v9dA 340 54.64 a.207.1.1 100535 3if5A 456 54.95 2r6fA 972 55.18 3d3yA 425 56.53 1ngkA 128 56.85 a.1.1.1 85673 3e91A 306 57.21 1dwkA 156 57.79 a.35.1.4,d.72.1.1 17075,39606 1u8bA 133 58.19 2dt8A 280 58.48 3iruA 277 58.50 1jakA 512 59.36 c.1.8.6,d.92.2.1 66472,66473 2ihtA 573 59.79 c.31.1.3,c.36.1.5,c.36.1.9 147685,147686,147687 1pq1A 196 61.09 f.1.4.1 94986 2dr3A 247 61.47 1dceB 331 62.34 a.102.4.3 18872 2ovkC 159 62.96 3gf3A 588 63.76 2al2A 436 64.94 c.1.11.1,d.54.1.1 126953,126954 2w02A 620 65.23 2og9A 393 66.49 3hibA 318 68.76 1auiB 169 70.98 a.39.1.5 17325 2bjiA 277 71.40 2qwvA 208 71.93 c.116.1.7 151439 2voyI 128 72.91 1e4yA 214 73.68 c.37.1.1,g.41.2.1 31901,45181 3kxsA 143 73.68 2zndA 172 74.08 2bm0A 691 74.09 b.43.3.1,c.37.1.8,d.14.1.1,d.58.11.1,d.58.11.1 128748,128749,128750,128751,128752 1zrnA 232 75.34 c.108.1.1 43323 1wovA 250 75.82 a.132.1.1 121124 1q59A 172 75.88 f.1.4.1 95881 1qv1A 195 77.62 a.39.1.5 96347 3eqcA 360 79.71 1alvA 173 80.80 a.39.1.8 17370 1sfxA 109 80.98 a.4.5.50 105505 1gg3A 279 81.78 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 3lv9A 148 82.16 2rhqB 795 82.22 2yr1A 257 83.26 2ae2A 260 83.67 c.2.1.2 29945 2j1dG 483 84.94 2wj1A 573 85.75 3fi7A 183 86.14 2c9hA 444 86.34 2qeeA 437 86.36 3m2tA 359 87.02 1dnpA 471 87.48 a.99.1.1,c.28.1.1 18775,31630 2ek8A 421 87.49