# List of top-scoring protein chains for t04-w0.5-1-n_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1owlA 484 1.129 a.99.1.1,c.28.1.1 93647,93648 3lsgA 103 1.322 2qorA 204 1.372 1u2wA 122 1.482 a.4.5.5 119487 1qnf 484 1.549 2fozA 347 2.506 1xo5A 183 6.338 a.39.1.5 115680 2od5A 116 6.383 a.4.5.70 148736 2j0fA 482 8.371 1a6sA 87 8.674 a.61.1.4 18134 3k7mX 431 10.36 1bl0A 129 10.85 a.4.1.8,a.4.1.8 16053,16054 1uhnA 189 11.30 a.39.1.5 99399 1s1eA 224 11.46 a.39.1.5 112007 1f21A 155 14.53 c.55.3.1 33550 2pjpA 121 14.68 2dbnA 461 15.53 1wsuA 124 17.27 a.4.5.35,a.4.5.35 121245,121246 1yzxA 226 18.22 3fwaA 497 18.31 1tezA 474 19.16 a.99.1.1,c.28.1.1 112409,112410 2dejA 350 19.55 1gxjA 186 19.99 d.215.1.1 70707 1u8bA 133 20.90 1rec 201 22.27 1dwkA 156 22.31 a.35.1.4,d.72.1.1 17075,39606 1o7dA 298 22.36 c.6.2.1 86641 1uouA 474 22.58 a.46.2.1,c.27.1.1,d.41.3.1 99706,99707,99708 1jl1A 155 23.68 c.55.3.1 66821 3ik4A 365 24.49 1wdcB 156 24.56 a.39.1.5 17302 2i7aA 174 26.78 1r1uA 106 26.98 a.4.5.5 104771 1sfxA 109 30.08 a.4.5.50 105505 2rn2 155 33.03 3gpgA 168 34.47 2ptsA 462 35.08 1zi8A 236 35.51 1gu2A 124 36.42 a.3.1.1 76348 3gbgA 276 37.03 1smtA 122 38.40 a.4.5.5 16109 2ajtA 500 38.78 b.43.2.2,c.85.1.2 126894,126895 2oqgA 114 39.41 2h7bA 105 39.84 a.277.1.1 147237 3dxfA 299 40.67 1r1tA 122 40.77 a.4.5.5 104769 2aamA 309 41.77 c.1.8.15 126489 2vsoE 289 42.45 3mklA 120 42.63 1np8A 159 42.97 a.39.1.8 92022 2bzeA 153 43.04 b.34.21.1 146224 1auiB 169 43.91 a.39.1.5 17325 2wm3A 299 46.84 2ou6A 190 47.33 a.213.1.2 149020 1g8iA 190 48.09 a.39.1.5 60363 2ct9A 208 49.23 2fkiA 126 49.43 d.198.3.1 133657 2fjuB 799 49.45 a.39.1.7,b.7.1.1,b.55.1.1,c.1.18.1 145170,145171,145172,145173 1k94A 165 49.75 a.39.1.8 68333 1obpA 159 51.07 b.60.1.1 27092 2phpA 192 53.26 c.74.1.2 149474 1lvaA 258 54.11 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1pieA 419 54.66 d.14.1.5,d.58.26.7 94706,94707 2woeA 299 55.71 1wovA 250 58.90 a.132.1.1 121124 1dw0A 112 59.19 a.3.1.1 15911 1zr5A 214 61.79 c.50.1.2 125525 3fw9A 495 61.96 5palA 109 63.58 a.39.1.4 17215 1gt1A 159 67.64 b.60.1.1 90515 2imfA 203 68.05 3b49A 211 68.99 3bqyA 209 72.78 1omrA 201 73.78 a.39.1.5 93349 1ax8A 146 75.02 a.26.1.1 16844 1w53A 84 76.71 a.186.1.2 109175 1xszA 356 76.75 a.118.3.1,d.129.9.1 116005,116006 3di5A 168 77.09 3eyyA 145 77.11 4cpvA 108 78.22 a.39.1.4 17198 1gg3A 279 78.24 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 2wwjA 348 79.03 3kw6A 78 79.39 3iayA 919 81.63 1bj7A 156 83.65 b.60.1.1 27113 3khiA 267 83.98 1p4xA 250 87.89 a.4.5.28,a.4.5.28 87784,87785