# List of top-scoring protein chains for t04-w0.5-1-bys-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1owlA 484 0.8516 a.99.1.1,c.28.1.1 93647,93648 1qnf 484 0.9315 1a6sA 87 1.008 a.61.1.4 18134 2fozA 347 2.326 2qorA 204 3.268 3lsgA 103 3.292 1u2wA 122 3.668 a.4.5.5 119487 3k7mX 431 5.385 2od5A 116 6.784 a.4.5.70 148736 1tezA 474 9.400 a.99.1.1,c.28.1.1 112409,112410 3fwaA 497 9.576 1xo5A 183 12.25 a.39.1.5 115680 1bl0A 129 16.91 a.4.1.8,a.4.1.8 16053,16054 1np8A 159 17.24 a.39.1.8 92022 2pjpA 121 18.79 3ik4A 365 19.24 1o7dA 298 19.69 c.6.2.1 86641 1uhnA 189 19.78 a.39.1.5 99399 1yakA 263 20.37 a.132.1.3 122833 1dw0A 112 22.20 a.3.1.1 15911 2j0fA 482 25.03 1wdcB 156 26.34 a.39.1.5 17302 1gu2A 124 27.17 a.3.1.1 76348 3fw9A 495 27.46 1gxjA 186 27.69 d.215.1.1 70707 1wsuA 124 29.99 a.4.5.35,a.4.5.35 121245,121246 2ajtA 500 32.10 b.43.2.2,c.85.1.2 126894,126895 2dejA 350 35.15 1sfxA 109 35.17 a.4.5.50 105505 2h7bA 105 36.89 a.277.1.1 147237 1f21A 155 38.14 c.55.3.1 33550 1k94A 165 38.96 a.39.1.8 68333 1rec 201 39.85 1jl1A 155 39.94 c.55.3.1 66821 2aamA 309 41.16 c.1.8.15 126489 1f4qA 165 42.41 a.39.1.8 17360 3i4kA 383 45.00 1u8bA 133 49.11 1smtA 122 50.80 a.4.5.5 16109 3di5A 168 50.81 2wm3A 299 51.28 1obpA 159 51.35 b.60.1.1 27092 1s1eA 224 52.83 a.39.1.5 112007 3gpgA 168 53.23 3dxfA 299 55.45 2ou6A 190 56.50 a.213.1.2 149020 1hkqA 132 56.64 a.4.5.10 83555 1w3wA 327 57.54 2phpA 192 57.69 c.74.1.2 149474 3fw7A 498 58.05 1rxqA 178 59.87 a.213.1.1 105118 1wovA 250 61.58 a.132.1.1 121124 1yzxA 226 62.91 2aajA 130 63.09 d.80.1.6 126481 1u9tA 354 65.26 e.62.1.1 119651 3c1vA 113 68.47 a.39.1.2 155867 2ce7A 476 68.51 a.269.1.1,c.37.1.20 130312,130313 1gt1A 159 68.90 b.60.1.1 90515 1zi8A 236 69.57 1lvaA 258 70.75 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2i7aA 174 70.99 2wwjA 348 71.63 1i4aA 318 71.99 a.65.1.1 61681 1gg3A 279 73.07 a.11.2.1,b.55.1.5,d.15.1.4 16372,27007,37615 1r1uA 106 74.87 a.4.5.5 104771 2rn2 155 74.91 1alvA 173 75.50 a.39.1.8 17370 2fjuB 799 76.28 a.39.1.7,b.7.1.1,b.55.1.1,c.1.18.1 145170,145171,145172,145173 1hp1A 516 77.39 d.114.1.1,d.159.1.2 70976,70977 2vsoE 289 77.60 2x5yA 173 79.57 3fw8A 495 80.38 1r1tA 122 82.87 a.4.5.5 104769 2woeA 299 84.01 2dbnA 461 85.54 2q91A 101 85.88 a.39.1.2 150135 1mogA 67 85.90 d.230.2.1 85034