# List of top-scoring protein chains for t04-w0.5-1-CB8-sep9-0.3-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2dbnA	461	1.984		
2fozA	347	8.140		
3lsgA	103	8.670		
1a6sA	87	9.613	a.61.1.4	18134
2qlzA	232	16.47		
1bl0A	129	20.79	a.4.1.8,a.4.1.8	16053,16054
3iayA	919	25.16		
3a42A	295	28.08		
1owlA	484	31.53	a.99.1.1,c.28.1.1	93647,93648
1np8A	159	33.10	a.39.1.8	92022
1hkqA	132	33.34	a.4.5.10	83555
2qorA	204	33.49		
3a46A	289	33.60		
2h7bA	105	33.82	a.277.1.1	147237
1tezA	474	40.17	a.99.1.1,c.28.1.1	112409,112410
3k7mX	431	42.20		
1qnf	484	44.53		
2zogA	479	47.43		
2er8A	72	47.56		
2aamA	309	49.34	c.1.8.15	126489
1wdcB	156	50.99	a.39.1.5	17302
2pjpA	121	52.62		
1u2wA	122	55.68	a.4.5.5	119487
3gbvA	304	58.27		
1gxjA	186	60.79	d.215.1.1	70707
1uhnA	189	64.07	a.39.1.5	99399
2vsoE	289	65.72		
2od5A	116	68.18	a.4.5.70	148736
1zq9A	285	68.40	c.66.1.24	125505
1ax8A	146	70.01	a.26.1.1	16844
1irxA	523	70.18	a.97.1.2,c.26.1.1	71378,71379
3bqyA	209	70.64		
2ajtA	500	71.83	b.43.2.2,c.85.1.2	126894,126895
2dri	271	73.65		
3edtB	283	77.81		
3gpgA	168	78.91		
1bykA	255	83.80	c.93.1.1	35706
1r1uA	106	85.44	a.4.5.5	104771
1ux8A	132	87.64	a.1.1.1	113449
3k7dA	498	87.75		
3ik4A	365	88.56		
2oqgA	114	89.64