# List of top-scoring protein chains for t04-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2r44A 331 1.043 3f45A 109 1.236 1xvjA 109 1.237 1pvaA 110 3.772 a.39.1.4 17207 3dfdA 157 3.970 1tn6B 437 3.971 a.102.4.3 112528 1cy5A 97 4.527 a.77.1.3 18430 1qwgA 251 5.165 c.1.27.1 96473 4cpvA 108 5.896 a.39.1.4 17198 5palA 109 5.952 a.39.1.4 17215 1smtA 122 7.998 a.4.5.5 16109 1r1tA 122 8.006 a.4.5.5 104769 3e96A 316 8.115 3kluA 157 8.194 3i7aA 281 8.225 2mnr 357 8.536 1rwyA 109 9.010 a.39.1.4 98002 1mdlA 359 9.867 c.1.11.2,d.54.1.1 29247,38891 3euvB 427 11.28 1mdl 359 12.85 2aifA 135 13.49 d.79.3.1 146055 1oxjA 173 14.37 a.60.1.2,a.118.1.13 87517,87518 1idrA 136 14.79 a.1.1.1 62301 1auiB 169 15.61 a.39.1.5 17325 1yioA 208 16.18 a.4.6.2,c.23.1.1 123326,123327 2h6fB 437 16.72 a.102.4.3 136186 2pgeA 377 17.72 2jk8A 302 17.74 1c3pA 375 18.54 c.42.1.2 32606 2o5gA 148 22.34 a.39.1.5 148598 1rroA 108 24.21 a.39.1.4 17195 1pq1A 196 27.57 f.1.4.1 94986 3f6oA 118 27.99 1vh0A 161 28.65 c.116.1.3 100626 2qsfX 171 30.26 2fkiA 126 30.98 d.198.3.1 133657 2x59A 761 32.80 1ub3A 220 32.88 c.1.10.1 88395 3fkrA 309 33.69 3fluA 297 34.79 2obhA 143 35.45 a.39.1.5 148716 1ux8A 132 36.89 a.1.1.1 113449 1snnA 227 37.88 d.115.1.2 105821 2pvbA 107 38.06 a.39.1.4 17205 2ja2A 498 38.70 1tbfA 347 38.83 a.211.1.2 106743 2oqgA 114 38.91 1kr7A 110 39.43 a.1.1.4 72890 1kk8B 139 40.88 a.39.1.5 77430 2cujA 108 40.92 a.4.1.18 130812 2bl0B 145 43.68 1rkpA 326 43.95 a.211.1.2 97620 2d6fA 435 45.07 b.38.3.1,c.88.1.1 131303,131304 2purA 292 45.59 3d0cA 314 46.33 1r0mA 375 46.74 c.1.11.2,d.54.1.1 104747,104748 1dlyA 164 46.95 a.1.1.1 14983 3bi8A 291 48.94 3i0tA 179 49.36 3fkkA 309 50.57 3iuoA 122 50.64 1eyvA 156 50.66 a.79.1.1 18446 1jf2A 195 51.00 a.39.1.5 62930 2x5bA 761 51.11 2ccmA 191 51.51 3if5A 456 52.65 3gbgA 276 52.99 1rlrA 761 53.79 a.98.1.1,c.7.1.2 18753,30679 2gkmA 136 54.71 1xtyA 120 56.59 3l1bA 233 56.90 2f3yA 148 57.47 a.39.1.5 146994 3dadA 339 57.99 2v4iB 213 58.88 2ayuA 417 59.16 d.305.1.1 127571 2ps2A 371 60.91 3a1sA 258 61.07 1z1bA 356 62.17 d.10.1.4,d.163.1.1 124346,124347 1j1qA 261 62.73 d.165.1.1 90768 3cnhA 200 62.82 2qdeA 397 62.93 1wdcB 156 63.67 a.39.1.5 17302 2h5nA 133 64.16 a.287.1.2 147227 1vz0A 230 64.20 a.4.14.1,d.268.1.1 108929,108930 1dlwA 116 64.42 a.1.1.1 14982 1rxqA 178 64.78 a.213.1.1 105118 3ih8A 456 65.52 1vzyA 291 65.81 d.193.1.1,g.81.1.1 114042,114043 1whtA 256 66.47 c.69.1.5 34646 1ggzA 148 67.13 a.39.1.5 70176 1n7kA 234 68.28 c.1.10.1 85374 2ia1A 178 68.94 d.359.1.1 147583 1exrA 148 69.54 a.39.1.5 17299 1r1uA 106 73.40 a.4.5.5 104771 1sdeA 347 74.33 e.3.1.1 112073 2atsA 292 74.38 c.1.10.1 127306 1pq4A 291 74.39 c.92.2.2 94995 3l9uA 201 74.64 3hg3A 404 74.91 2ou6A 190 76.47 a.213.1.2 149020 2zmeC 102 77.13 3cz7A 364 77.38 1tuzA 118 78.17 a.39.1.7 112670 1qksA 567 78.41 a.3.1.2,b.70.2.1 15951,27710 1gvjA 146 78.48 a.4.5.21 90525 3im1A 328 79.27 1vq0A 302 79.60 d.193.1.1,g.81.1.1 114000,114001 1tigA 94 79.87 d.68.1.1 39566 2ovkC 159 79.90 1ur1A 378 80.10 c.1.8.3 99804 3ik4A 365 80.35 2i88A 191 82.30 2yskA 145 82.58 2ehhA 294 83.97 1ngr 85 84.56 104lA 166 85.49 d.2.1.3 36969 1d2zA 108 85.54 a.77.1.2 18437 1zq1A 438 85.84 b.38.3.1,c.88.1.1 125489,125490 1so2A 420 86.14 a.211.1.2 98936 1rlr 761 86.35 3hibA 318 86.86 3mklA 120 87.74 1g8pA 350 88.11 c.37.1.20 60376 3eb2A 300 88.67