# List of template models which gave the target the best scores. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Template_ID Template_Length Template_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 3l8bA 897 3.996e+00 2sas 186 4.439e+00 2sas 1ig9A 902 5.232e+00 1clqA c.55.3.5 62367 e.8.1.1 62368 2sasA 186 5.607e+00 a.39.1.5 17258 3c3kA 268 6.379e+00 2k2oA 124 7.086e+00 1snlA 100 8.465e+00 a.39.1.7 105820 2i46A 153 8.943e+00 1hhnA 102 9.428e+00 1hhnA b.104.1.1 61043 2f6mA 66 9.682e+00 a.2.17.1 133051 2e87A 357 9.702e+00 1sl8A 182 1.010e+01 a.39.1.5 112099 1a4pA 93 1.012e+01 1b4cA a.39.1.2 17176 3cl6A 303 1.081e+01 1f4qA 162 1.103e+01 1alvA a.39.1.8 17360 1vkrA 98 1.105e+01 c.44.2.1 108689 1uhkA 192 1.121e+01 a.39.1.5 119681 1k0wA 224 1.148e+01 c.74.1.1 77220 1vpwA 339 1.222e+01 1qpzA a.35.1.5 17087 c.93.1.1 35680 1jdiA 224 1.280e+01 c.74.1.1 66551 2ct9A 186 1.325e+01 1qv1A 188 1.340e+01 a.39.1.5 96347 1jftA 341 1.343e+01 a.35.1.5 66652 c.93.1.1 66653 3brqA 272 1.363e+01 1m8oB 48 1.375e+01 j.60.1.1 78776 2q4uA 271 1.424e+01 2c1wA 274 1.428e+01 d.294.1.1 129644 1psrA 101 1.445e+01 1psrA a.39.1.2 17180 1zoyD 103 1.453e+01 1y1xA 183 1.490e+01 a.39.1.8 116374 2scpA 175 1.496e+01 2scpA a.39.1.5 17256 2ccmA 191 1.530e+01 2vdeA 429 1.545e+01 3bilA 258 1.545e+01 1id6A 16 1.558e+01 k.33.1.1 71193 2o20A 272 1.606e+01 1h3oA 50 1.608e+01 a.22.1.3 76644 3jy6A 264 1.629e+01 1efaA 329 1.638e+01 1tlfA a.35.1.5 17106 c.93.1.1 35691 1zkdA 358 1.660e+01 c.66.1.52 125184 3g85A 271 1.705e+01 1htwA 159 1.711e+01 c.37.1.18 71083 1y0vH 147 1.813e+01 a.39.1.5 145893 1rtwA 207 1.891e+01 a.132.1.3 97823 2doaA 105 1.892e+01 a.4.5.81 146548 1s4xA 48 1.905e+01 j.60.1.1 98514 1fl9A 158 1.961e+01 c.37.1.18 70137 1jbaA 190 1.963e+01 1rec a.39.1.5 17330 2hpsA 185 1.967e+01 3czcA 94 2.080e+01 1zklA 318 2.092e+01 2bl0C 143 2.180e+01 3k21A 179 2.220e+01 3d5kA 456 2.313e+01 1vrvA 98 2.332e+01 2bkyA 90 2.346e+01 d.68.6.1 128715 1e44A 85 2.420e+01 3eipA d.26.2.1 59219 3ctpA 267 2.427e+01 2bf5A 93 2.450e+01 d.137.1.1 128405 2iksA 277 2.534e+01 3butA 126 2.576e+01 2od5A 92 2.597e+01 a.4.5.70 148736 1r4vA 152 2.650e+01 a.22.1.4 97049 1yc9A 412 2.721e+01 2fepA 274 2.786e+01 1o7dA 292 2.815e+01 c.6.2.1 86641 2driA 272 2.816e+01 c.93.1.1 35637 2wwuA 364 2.824e+01 1nd4A 256 2.866e+01 d.144.1.6 91815 1dbqA 277 2.874e+01 1qpzA c.93.1.1 35666 1yxyA 231 2.889e+01 c.1.2.5 124203 3e3rA 184 2.912e+01 3djwA 96 2.926e+01 1tyhA 222 2.978e+01 a.132.1.3 107458 3egcA 262 3.033e+01 1bykA 256 3.049e+01 1bykA c.93.1.1 35706 3iolB 27 3.059e+01 3mizA 282 3.062e+01 3e3mA 271 3.086e+01 3d8uA 265 3.144e+01 2qu7A 275 3.172e+01 2o5gA 148 3.212e+01 a.39.1.5 148598 3h5oA 272 3.315e+01 1qqcA 741 3.442e+01 1tgoA c.55.3.5 33724 e.8.1.1 43013 1rec 186 3.481e+01 1rec 1uddA 216 3.610e+01 a.132.1.3 107776 2f3yA 147 3.693e+01 a.39.1.5 146994 3bx8A 168 3.755e+01 3kjxA 334 3.810e+01 1ccwA 138 3.915e+01 1be1 c.23.6.1 31238