# TARGET T0554 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0554.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 295 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.064 0.004 0.005 0.008 0.220 0.698 2 P 0.180 0.024 0.004 0.006 0.059 0.726 3 V 0.482 0.043 0.006 0.011 0.051 0.408 4 E 0.647 0.013 0.007 0.012 0.051 0.269 5 L 0.628 0.057 0.005 0.007 0.052 0.251 6 R 0.312 0.039 0.009 0.006 0.412 0.222 7 A 0.133 0.010 0.006 0.003 0.592 0.257 8 N 0.013 0.005 0.003 0.001 0.706 0.272 9 W 0.004 0.044 0.001 0.001 0.544 0.407 10 S 0.001 0.003 0.001 0.002 0.052 0.942 11 E 0.001 0.001 0.007 0.951 0.022 0.020 12 E 0.001 0.001 0.004 0.979 0.013 0.004 13 D 0.001 0.001 0.004 0.990 0.004 0.001 14 L 0.001 0.001 0.001 0.998 0.001 0.001 15 E 0.001 0.001 0.001 0.999 0.001 0.001 16 T 0.001 0.001 0.001 0.999 0.001 0.001 17 V 0.001 0.001 0.001 0.999 0.001 0.001 18 I 0.001 0.001 0.001 0.999 0.001 0.001 19 R 0.001 0.001 0.001 0.999 0.001 0.001 20 A 0.001 0.001 0.001 0.999 0.001 0.001 21 V 0.001 0.001 0.001 0.999 0.001 0.001 22 Y 0.001 0.001 0.001 0.999 0.001 0.001 23 R 0.001 0.001 0.001 0.997 0.002 0.001 24 Q 0.001 0.001 0.002 0.988 0.007 0.003 25 V 0.001 0.001 0.003 0.973 0.016 0.006 26 L 0.001 0.001 0.006 0.925 0.041 0.026 27 G 0.004 0.001 0.009 0.514 0.224 0.247 28 N 0.019 0.004 0.020 0.229 0.331 0.397 29 D 0.051 0.017 0.018 0.152 0.328 0.434 30 Y 0.105 0.031 0.023 0.177 0.283 0.380 31 V 0.138 0.016 0.030 0.156 0.262 0.398 32 M 0.157 0.017 0.058 0.188 0.280 0.300 33 A 0.130 0.008 0.096 0.262 0.297 0.207 34 S 0.073 0.005 0.074 0.320 0.302 0.226 35 E 0.053 0.008 0.066 0.395 0.270 0.208 36 R 0.051 0.013 0.058 0.524 0.172 0.182 37 L 0.033 0.005 0.029 0.745 0.089 0.099 38 V 0.020 0.002 0.016 0.873 0.036 0.053 39 S 0.028 0.004 0.014 0.863 0.030 0.061 40 A 0.004 0.001 0.005 0.972 0.007 0.011 41 E 0.005 0.001 0.011 0.976 0.005 0.003 42 S 0.002 0.001 0.007 0.983 0.005 0.003 43 L 0.001 0.001 0.007 0.983 0.005 0.004 44 L 0.001 0.001 0.003 0.986 0.005 0.004 45 R 0.001 0.001 0.004 0.982 0.008 0.004 46 N 0.003 0.001 0.006 0.807 0.089 0.093 47 G 0.005 0.001 0.007 0.098 0.283 0.606 48 K 0.060 0.009 0.003 0.035 0.271 0.623 49 I 0.291 0.088 0.003 0.025 0.134 0.460 50 T 0.282 0.103 0.002 0.050 0.062 0.501 51 V 0.006 0.001 0.007 0.963 0.011 0.012 52 R 0.001 0.001 0.003 0.995 0.002 0.001 53 E 0.001 0.001 0.003 0.992 0.004 0.001 54 F 0.001 0.001 0.002 0.996 0.002 0.001 55 V 0.001 0.001 0.001 0.997 0.001 0.001 56 R 0.001 0.001 0.001 0.993 0.004 0.001 57 A 0.001 0.001 0.001 0.985 0.010 0.003 58 V 0.001 0.001 0.001 0.977 0.012 0.009 59 A 0.001 0.001 0.003 0.932 0.025 0.038 60 K 0.001 0.001 0.005 0.811 0.061 0.121 61 S 0.001 0.001 0.003 0.576 0.037 0.382 62 E 0.001 0.001 0.002 0.959 0.008 0.030 63 L 0.001 0.001 0.008 0.969 0.015 0.007 64 Y 0.001 0.001 0.020 0.942 0.032 0.004 65 K 0.001 0.001 0.022 0.945 0.029 0.003 66 E 0.003 0.001 0.023 0.917 0.043 0.014 67 K 0.006 0.001 0.016 0.895 0.050 0.031 68 F 0.023 0.007 0.012 0.749 0.091 0.117 69 L 0.089 0.033 0.023 0.432 0.167 0.255 70 Y 0.103 0.014 0.032 0.335 0.258 0.259 71 G 0.035 0.009 0.021 0.420 0.244 0.270 72 N 0.016 0.012 0.010 0.451 0.255 0.256 73 F 0.005 0.006 0.009 0.682 0.155 0.144 74 Q 0.001 0.002 0.004 0.918 0.023 0.051 75 T 0.001 0.001 0.001 0.995 0.002 0.003 76 R 0.001 0.001 0.001 0.998 0.001 0.001 77 V 0.001 0.001 0.001 0.999 0.001 0.001 78 I 0.001 0.001 0.001 0.999 0.001 0.001 79 E 0.001 0.001 0.001 0.999 0.001 0.001 80 L 0.001 0.001 0.001 0.999 0.001 0.001 81 N 0.001 0.001 0.001 0.999 0.001 0.001 82 Y 0.001 0.001 0.001 0.998 0.001 0.001 83 K 0.001 0.001 0.002 0.993 0.004 0.001 84 H 0.001 0.001 0.004 0.988 0.005 0.003 85 L 0.001 0.001 0.006 0.967 0.014 0.011 86 L 0.003 0.001 0.007 0.651 0.101 0.237 87 G 0.003 0.001 0.001 0.011 0.089 0.894 88 R 0.014 0.011 0.016 0.012 0.206 0.740 89 A 0.020 0.010 0.029 0.012 0.305 0.624 90 P 0.010 0.012 0.076 0.019 0.363 0.519 91 Y 0.012 0.014 0.022 0.017 0.298 0.637 92 D 0.009 0.004 0.009 0.061 0.240 0.677 93 E 0.001 0.001 0.005 0.975 0.013 0.007 94 S 0.001 0.001 0.004 0.980 0.013 0.003 95 E 0.001 0.001 0.004 0.981 0.011 0.002 96 V 0.001 0.001 0.001 0.994 0.003 0.002 97 I 0.001 0.001 0.001 0.993 0.004 0.002 98 F 0.001 0.001 0.001 0.993 0.003 0.003 99 H 0.001 0.001 0.001 0.997 0.001 0.002 100 L 0.001 0.001 0.001 0.998 0.001 0.001 101 D 0.001 0.001 0.001 0.998 0.001 0.001 102 L 0.001 0.001 0.001 0.996 0.002 0.001 103 Y 0.001 0.001 0.002 0.990 0.005 0.002 104 E 0.001 0.001 0.002 0.992 0.004 0.001 105 N 0.001 0.001 0.001 0.992 0.004 0.003 106 E 0.001 0.001 0.001 0.971 0.007 0.021 107 G 0.001 0.001 0.001 0.287 0.030 0.681 108 F 0.001 0.001 0.001 0.764 0.019 0.213 109 D 0.002 0.001 0.002 0.964 0.011 0.020 110 A 0.002 0.001 0.002 0.988 0.004 0.003 111 D 0.002 0.001 0.002 0.992 0.002 0.001 112 I 0.001 0.001 0.002 0.994 0.002 0.001 113 D 0.001 0.001 0.006 0.989 0.004 0.001 114 S 0.001 0.001 0.006 0.986 0.006 0.002 115 Y 0.001 0.001 0.003 0.982 0.009 0.004 116 I 0.001 0.001 0.007 0.923 0.032 0.036 117 D 0.001 0.003 0.004 0.602 0.065 0.326 118 S 0.001 0.001 0.002 0.886 0.016 0.095 119 P 0.001 0.001 0.001 0.988 0.005 0.006 120 E 0.001 0.001 0.001 0.994 0.003 0.001 121 Y 0.001 0.001 0.001 0.994 0.004 0.001 122 T 0.001 0.001 0.003 0.993 0.004 0.001 123 N 0.001 0.001 0.005 0.982 0.011 0.002 124 S 0.001 0.001 0.005 0.973 0.014 0.008 125 F 0.001 0.004 0.006 0.849 0.053 0.087 126 G 0.003 0.009 0.033 0.301 0.246 0.408 127 D 0.007 0.007 0.264 0.183 0.386 0.153 128 W 0.019 0.004 0.268 0.187 0.386 0.137 129 V 0.041 0.023 0.223 0.207 0.396 0.110 130 V 0.067 0.043 0.054 0.110 0.434 0.292 131 P 0.070 0.007 0.147 0.098 0.355 0.323 132 Y 0.052 0.016 0.307 0.096 0.305 0.223 133 Y 0.035 0.029 0.268 0.085 0.262 0.321 134 R 0.021 0.014 0.072 0.067 0.192 0.634 135 G 0.001 0.001 0.002 0.003 0.043 0.951