PFRMAT SS
TARGET T0554
METHOD Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    6 (1 EBGHTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0554.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 295
METHOD
MODEL 1
M C 0.698
P C 0.726
V E 0.482
E E 0.647
L E 0.628
R T 0.412
A T 0.592
N T 0.706
W T 0.544
S C 0.942
E H 0.951
E H 0.979
D H 0.990
L H 0.998
E H 0.999
T H 0.999
V H 1.000
I H 1.000
R H 1.000
A H 0.999
V H 1.000
Y H 0.999
R H 0.997
Q H 0.988
V H 0.973
L H 0.925
G H 0.514
N C 0.397
D C 0.434
Y C 0.380
V C 0.398
M C 0.300
A T 0.297
S H 0.320
E H 0.395
R H 0.524
L H 0.745
V H 0.873
S H 0.863
A H 0.972
E H 0.976
S H 0.983
L H 0.983
L H 0.986
R H 0.982
N H 0.807
G C 0.606
K C 0.623
I C 0.460
T C 0.501
V H 0.963
R H 0.995
E H 0.992
F H 0.996
V H 0.997
R H 0.993
A H 0.985
V H 0.977
A H 0.932
K H 0.811
S H 0.576
E H 0.959
L H 0.969
Y H 0.942
K H 0.945
E H 0.917
K H 0.895
F H 0.749
L H 0.432
Y H 0.335
G H 0.420
N H 0.451
F H 0.682
Q H 0.918
T H 0.995
R H 0.998
V H 0.999
I H 1.000
E H 0.999
L H 0.999
N H 0.999
Y H 0.998
K H 0.993
H H 0.988
L H 0.967
L H 0.651
G C 0.894
R C 0.740
A C 0.624
P C 0.519
Y C 0.637
D C 0.677
E H 0.975
S H 0.980
E H 0.981
V H 0.994
I H 0.993
F H 0.993
H H 0.997
L H 0.998
D H 0.998
L H 0.996
Y H 0.990
E H 0.992
N H 0.992
E H 0.971
G C 0.681
F H 0.764
D H 0.964
A H 0.988
D H 0.992
I H 0.994
D H 0.989
S H 0.986
Y H 0.982
I H 0.923
D H 0.602
S H 0.886
P H 0.988
E H 0.994
Y H 0.994
T H 0.993
N H 0.982
S H 0.973
F H 0.849
G C 0.408
D T 0.386
W T 0.386
V T 0.396
V T 0.434
P T 0.355
Y G 0.307
Y C 0.321
R C 0.634
G C 0.951
END