PFRMAT SS
TARGET T0554
AUTHOR SAM-T02-server
METHOD Using neural net t2k-5740-IDaaHr-5-15-7-15-9-15-13-ebghstl-seeded.net
METHOD This is a 4-layer network, with 
METHOD	window	units
METHOD	    5	   15
METHOD	    7	   15
METHOD	    9	   15
METHOD	   13	    7 (1 EBGHSTL )
METHOD The input amino acid frequencies were determined from
METHOD alignment T0554.t2k-thin90.a2m.gz
METHOD with weighted counts, using HenikoffWeight(-1 bits/column, 1)
METHOD Counts were regularized to probabilities using
METHOD /projects/compbio/lib/recode3.20comp
METHOD Total sequence weight for alignment was 295
METHOD
MODEL 1
M C 0.992
P C 0.824
V E 0.547
E E 0.775
L E 0.667
R C 0.522
A C 0.540
N C 0.596
W C 0.554
S C 0.718
E H 0.914
E H 0.948
D H 0.968
L H 0.993
E H 0.994
T H 0.992
V H 0.994
I H 0.997
R H 0.998
A H 0.998
V H 0.998
Y H 0.996
R H 0.993
Q H 0.984
V H 0.971
L H 0.867
G H 0.526
N T 0.315
D C 0.385
Y C 0.378
V C 0.430
M C 0.344
A H 0.336
S H 0.393
E H 0.367
R H 0.315
L H 0.424
V H 0.646
S H 0.759
A H 0.836
E H 0.874
S H 0.888
L H 0.872
L H 0.815
R H 0.666
N T 0.662
G T 0.563
K C 0.589
I E 0.531
T C 0.454
V H 0.942
R H 0.980
E H 0.991
F H 0.992
V H 0.986
R H 0.978
A H 0.965
V H 0.876
A H 0.516
K T 0.478
S C 0.483
E H 0.948
L H 0.936
Y H 0.932
K H 0.923
E H 0.850
K H 0.720
F H 0.544
L H 0.309
Y H 0.252
G T 0.372
N C 0.371
F C 0.430
Q H 0.392
T H 0.761
R H 0.893
V H 0.934
I H 0.973
E H 0.983
L H 0.990
N H 0.993
Y H 0.992
K H 0.979
H H 0.964
L H 0.951
L H 0.717
G T 0.461
R S 0.507
A C 0.674
P C 0.564
Y C 0.679
D C 0.864
E H 0.981
S H 0.982
E H 0.985
V H 0.993
I H 0.991
F H 0.982
H H 0.988
L H 0.992
D H 0.993
L H 0.994
Y H 0.993
E H 0.966
N H 0.895
E H 0.581
G T 0.516
F C 0.569
D H 0.708
A H 0.845
D H 0.875
I H 0.862
D H 0.876
S H 0.835
Y H 0.806
I H 0.581
D C 0.401
S H 0.648
P H 0.957
E H 0.961
Y H 0.959
T H 0.937
N H 0.847
S H 0.728
F T 0.461
G T 0.409
D T 0.316
W C 0.379
V C 0.507
V C 0.565
P C 0.560
Y C 0.482
Y C 0.530
R C 0.742
G C 0.944
END