Best Alignments for T0550

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
3flpA/T0550-3flpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3flpA/T0550-3flpA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2920e-011.77e-22
1ms9A/T0550-1ms9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ms9A/T0550-1ms9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.9036e-014.52e-22 b.29.1.15
b.68.1.1
3ginA/T0550-3ginA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3ginA/T0550-3ginA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.4661e+004.00e-15
2dpkA/T0550-2dpkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2dpkA/T0550-2dpkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3023e+001.57e-14 b.1.27.1
2ebnA/T0550-2ebnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ebnA/T0550-2ebnA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.9276e+003.53e+00 c.1.8.5
1h6fA/T0550-1h6fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h6fA/T0550-1h6fA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0729e+002.03e-13 b.2.5.4
2v73A/T0550-2v73A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2v73A/T0550-2v73A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.3436e+001.07e-14
3ffzA/T0550-3ffzA-t04-local-adpstyle1.a2m 3ffzA/T0550-3ffzA-t04-local-adpstyle1.al 1.0290e+013.31e-03
1sacA/T0550-1sacA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sacA/T0550-1sacA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1890e+017.24e-15 1sacA b.29.1.5
2w08A/T0550-2w08A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2w08A/T0550-2w08A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3440e+015.48e-14

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001