Best Alignments for T0550

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1h6fA/T0550-1h6fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1h6fA/T0550-1h6fA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8813e+002.21e-05 b.2.5.4
3ckaA/T0550-3ckaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3ckaA/T0550-3ckaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.9759e+002.00e-04
3cihA/T0550-3cihA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cihA/T0550-3cihA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.5796e+015.68e-11
2q9kA/T0550-2q9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2q9kA/T0550-2q9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3542e+011.07e-05
1qwrA/T0550-1qwrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1qwrA/T0550-1qwrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.3972e+013.97e-14 b.82.1.3
3cfsB/T0550-3cfsB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3cfsB/T0550-3cfsB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.7900e+014.42e-13
3bs6A/T0550-3bs6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3bs6A/T0550-3bs6A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1745e+014.07e-12
3hjrA/T0550-3hjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3hjrA/T0550-3hjrA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2092e+017.54e-13
1dleA/T0550-1dleA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1dleA/T0550-1dleA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.2904e+011.10e-04 1dleA b.47.1.2
3ejjX/T0550-3ejjX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 3ejjX/T0550-3ejjX-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4060e+011.81e-07

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001