# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2ausA 334 1.96e+00 3cslA 865 3.10e+00 3ckaA 320 4.42e+00 3elqA 571 6.40e+00 1rqwA 207 6.43e+00 b.25.1.1 97781 2blrA 206 6.49e+00 b.25.1.1 128741 2vhkA 206 6.49e+00 1kwnA 207 7.58e+00 b.25.1.1 77568 1thv 207 7.92e+00 1thv 2vu6A 207 8.04e+00 2b5iC 199 8.48e+00 b.1.2.1,b.1.2.1 127898,127899 3cbtA 237 1.01e+01 3exmA 237 1.01e+01 1c3hA 137 1.15e+01 b.22.1.1 90405 2ogrA 229 1.18e+01 1gpiA 431 1.21e+01 b.29.1.10 65450 2odjA 428 1.36e+01 1p4uA 153 1.45e+01 b.1.10.2 87780 2i5vO 251 1.55e+01 1e8nA 710 1.79e+01 1qfmA b.69.7.1,c.69.1.4 27675,34643 1nwpA 128 1.98e+01 1nwpA b.6.1.1 23011 1h6fA 193 2.02e+01 b.2.5.4 70901 1xovA 326 2.13e+01 b.34.11.4,c.56.5.6 122206,122207 1edzA 320 2.34e+01 1ee9A c.2.1.7,c.58.1.2 30287,33935 2bsdA 264 2.34e+01 b.21.1.3,b.108.1.4,b.163.1.2 129081,129082,129083 1y4wA 518 2.40e+01 b.29.1.19,b.67.2.3 116470,116471 1pbyA 489 2.47e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1h2xA 710 2.49e+01 b.69.7.1,c.69.1.4 76598,76599 2d5lA 706 2.49e+01 3greA 437 2.53e+01 1h2wA 710 2.56e+01 b.69.7.1,c.69.1.4 76596,76597 1qfmA 710 2.57e+01 1qfmA b.69.7.1,c.69.1.4 27673,34641 2p45B 123 2.60e+01 1gnyA 153 2.65e+01 b.18.1.11 65404 3hfqA 347 2.71e+01 2dtcA 126 2.74e+01 3g4eA 297 2.84e+01 1ca1 370 2.88e+01 1ca1 1ca1A 370 2.88e+01 a.124.1.1,b.12.1.3 19340,23648 2v8pA 271 2.98e+01 1o6gA 710 2.98e+01 b.69.7.1,c.69.1.4 81087,81088 3hvdA 548 3.07e+01 3cox 507 3.08e+01 1b8sA 3coxA 507 3.08e+01 c.3.1.2,d.16.1.1 30332,37863 1ee9A 320 3.10e+01 1ee9A c.2.1.7,c.58.1.2 30288,33936 1xruA 282 3.12e+01 b.82.1.13 122262 1u00A 227 3.17e+01 a.8.4.1,b.130.1.1 112900,112901 1pmhX 185 3.28e+01 b.18.1.18 104193 3h6jA 438 3.29e+01 1pmjX 185 3.29e+01 b.18.1.18 104194 1eybA 471 3.38e+01 1ey2A b.82.1.4 28115 3f02A 359 3.48e+01 1x1iA 752 3.54e+01 a.102.3.2,b.24.1.1,b.30.5.2 121584,121585,121586 1bxvA 91 3.59e+01 1aac b.6.1.1 22875 2w38A 438 3.61e+01 2hazA 105 3.67e+01 b.1.2.1 136303 3bg8A 238 3.69e+01 3ii7A 306 3.72e+01 1ywkA 289 3.95e+01 b.82.1.13 124155 3ir8A 221 4.02e+01 1pm4A 119 4.08e+01 b.135.1.1 94891 3aagA 291 4.11e+01 3fgqA 397 4.11e+01 1s4iA 175 4.12e+01 1txnA 328 4.13e+01 d.248.1.1 112779 1bxeA 113 4.31e+01 1bxeA d.55.1.1 38898 1qveA 126 4.32e+01 d.24.1.1 104594 2zxeB 305 4.37e+01 3f7rA 249 4.46e+01 2iwkA 642 4.51e+01 1mpyA 307 4.51e+01 1mpyA d.32.1.3,d.32.1.3 38508,38509 1khoA 370 4.58e+01 a.124.1.1,b.12.1.3 72489,72490 3f7pC 248 4.60e+01 3fwmA 751 4.63e+01 1zhrA 238 4.64e+01 3c9zA 258 4.64e+01 2z3zA 706 4.67e+01 2w20A 471 4.67e+01 3f7qA 234 4.68e+01 2kieA 124 4.74e+01 1qpxA 218 4.78e+01 1qpxA b.1.11.1,b.7.2.1 22318,23200 1ri6A 343 4.87e+01 b.69.11.1 97503 1r9hA 135 5.11e+01 d.26.1.1 97260 1fwxA 595 5.14e+01 b.6.1.4,b.69.3.1 60069,60070 2wxuA 370 5.17e+01 2p49B 123 5.25e+01 b.1.1.1 149207 1yoxA 250 5.26e+01 b.82.5.2 123789 1epaA 164 5.40e+01 1epaA b.60.1.1 27128 1w8oA 601 5.53e+01 b.1.18.2,b.18.1.1,b.68.1.1 114374,114375,114376 1qppA 218 5.64e+01 1qpxA b.1.11.1,b.7.2.1 22320,23202 3gd0A 367 5.65e+01 1j0mA 752 5.65e+01 a.102.3.2,b.24.1.1,b.30.5.2 83910,83911,83912 1pzdA 322 5.67e+01 b.1.10.3,d.105.1.2 95413,95414 1xx9A 238 5.67e+01 b.47.1.2 116149 2wzpA 266 5.70e+01 1wcqA 601 5.71e+01 b.1.18.2,b.18.1.1,b.68.1.1 120894,120895,120896 1ibzA 112 5.73e+01 1ibzA b.6.1.4 62237 1zruA 264 5.76e+01 b.21.1.3,b.108.1.4,b.163.1.2 125560,125561,125562 2c9oA 456 5.78e+01 1ibyA 112 5.78e+01 1ibzA b.6.1.4 62233 1eut 605 5.86e+01 1eut 1dleA 298 5.92e+01 1dleA b.47.1.2 26312 2uubE 162 5.95e+01 d.14.1.1,d.50.1.2 139936,139937 2bjuA 453 6.10e+01 b.50.1.2 128633 2oy7A 320 6.13e+01 1sh8A 154 6.14e+01 d.38.1.5 105549 3fouA 156 6.22e+01 3ef2A 293 6.31e+01 2imjA 166 6.46e+01 d.17.4.23 147725 2e4mC 146 6.57e+01 3k6oA 224 6.70e+01 1y43B 173 6.78e+01 3kicA 736 6.80e+01 2fhqA 141 6.84e+01 b.45.1.1 133497 1n6eA 1071 6.97e+01 b.36.1.3,b.68.7.1,b.69.9.1,c.14.1.2 80149,80150,80151,80152 3hi7A 731 6.97e+01 1zhpA 238 7.01e+01 1xtmA 175 7.03e+01 1qg3A 195 7.07e+01 1qg3A b.1.2.1,b.1.2.1 21993,21994 1zhmA 238 7.10e+01 2vqeE 162 7.13e+01 i.1.1.3 153429 1ojqA 212 7.19e+01 d.166.1.1 93146 1i4jA 110 7.26e+01 d.55.1.1 76734 3gneA 252 7.29e+01 2bs9A 503 7.31e+01 b.71.1.2,c.1.8.3 129062,129063 3cihA 739 7.38e+01 1tk1A 260 7.49e+01 d.248.1.1 107066 2ihoA 293 7.55e+01 b.42.2.1,d.3.1.18 147681,147682 2ddxA 333 7.60e+01 1xl4A 301 7.67e+01 b.1.18.16,f.14.1.1 115430,115431 1w0pA 781 7.72e+01 b.29.1.8,b.29.1.8,b.68.1.1 109038,109039,109040 2pooA 355 7.79e+01 1qlgA b.68.3.1 27626 3ig2A 213 7.80e+01 1aym3 238 7.90e+01 1aym3 1cuoA 129 7.92e+01 1nwpA b.6.1.1 23015 2whtA 240 7.94e+01 2fjuB 799 7.94e+01 a.39.1.7,b.7.1.1,b.55.1.1,c.1.18.1 145170,145171,145172,145173