# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h6fA 193 1.49e-01 b.2.5.4 70901 1dleA 298 1.65e+00 1dleA b.47.1.2 26312 1xzzA 246 1.97e+00 3kljA 385 2.02e+00 1xg8A 111 5.44e+00 c.47.1.17 115283 2q9kA 151 7.15e+00 2wuhA 178 8.57e+00 1pkhA 204 1.03e+01 b.85.4.1 94832 1l0iA 78 1.04e+01 a.28.1.1 77643 3hf5A 116 1.06e+01 2cg4A 152 1.23e+01 a.4.5.32,d.58.4.2 130417,130418 1t8kA 77 1.29e+01 a.28.1.1 106666 3kfoA 288 1.39e+01 1b78A 193 1.40e+01 1b78A c.51.4.1 33221 1di6A 195 1.41e+01 1di6A c.57.1.1 33863 2cz9A 350 1.43e+01 1yduA 170 1.46e+01 b.162.1.1 123003 2ftxA 90 1.53e+01 d.300.1.1 134085 1kn3A 183 1.57e+01 b.17.1.1 72764 2c36A 285 1.64e+01 3k63A 126 1.77e+01 2dejA 350 1.77e+01 3drnA 161 1.79e+01 2go8A 122 1.91e+01 d.58.4.5 147144 3ckaA 320 1.92e+01 2zw3A 226 2.18e+01 2iqyA 190 2.24e+01 3hrzD 741 2.26e+01 2w1vA 276 2.29e+01 1bp3B 211 2.39e+01 1axiB b.1.2.1,b.1.2.1 22031,22032 1q0xH 221 2.41e+01 b.1.1.1,b.1.1.2 95517,95518 3b7yA 153 2.44e+01 3itaA 352 2.51e+01 3i3uA 112 2.51e+01 2vzpA 127 2.82e+01 1wyzA 242 2.91e+01 c.90.1.1 121471 3cygA 222 3.06e+01 2i5vO 251 3.11e+01 3ginA 160 3.12e+01 3g7mA 151 3.17e+01 1of5B 184 3.69e+01 d.17.4.2 86934 2kpuA 96 3.81e+01 1guiA 155 3.85e+01 b.18.1.14 76351 3lqyA 190 4.05e+01 1behA 187 4.09e+01 1a44 b.17.1.1 23700 1zbpA 273 4.17e+01 e.61.1.1 124861 3cjxA 165 4.21e+01 2w3jA 145 4.26e+01 2ehsA 77 4.30e+01 1kzfA 230 4.46e+01 d.108.1.3 73354 2kieA 124 4.50e+01 1p4uA 153 4.55e+01 b.1.10.2 87780 1srrA 124 4.82e+01 1dz3A c.23.1.1 31110 2dyuA 334 4.87e+01 1b7aA 186 4.92e+01 1a44 b.17.1.1 23705 1bxvA 91 5.09e+01 1aac b.6.1.1 22875 2v0vA 194 5.21e+01 2ozhA 142 5.38e+01 1iw0A 215 5.56e+01 a.132.1.1 83720 3lh5A 251 5.57e+01 1mqkH 127 5.62e+01 b.1.1.1 85053 1x6zA 123 5.67e+01 d.24.1.1 121763 1yo6A 250 5.67e+01 c.2.1.2 123769 2p45B 123 5.75e+01 1vkiA 181 5.92e+01 d.116.1.1 108664 3lywA 90 6.05e+01 2v8pA 271 6.13e+01 2j1pA 293 6.21e+01 1aqkL 216 6.31e+01 8fabA b.1.1.1,b.1.1.2 20192,21208 1jmaA 290 6.33e+01 b.1.1.1 63177 2ko5A 99 6.43e+01 1d3bA 75 6.56e+01 1d3bA b.38.1.1 24798 1u9lA 70 6.71e+01 a.60.4.2 107751 2dpkA 152 6.71e+01 b.1.27.1 131616 2ac2A 309 6.80e+01 3hhjA 158 6.80e+01 1wbeA 209 6.91e+01 1wzdA 215 6.94e+01 a.132.1.1 121493 1kcvH 217 6.98e+01 b.1.1.1,b.1.1.2 72315,72316 2k2dA 79 7.07e+01 2jtkA 90 7.19e+01 1dzoA 123 7.21e+01 1dzoA d.24.1.1 38378 2vvfA 269 7.27e+01 2or4A 709 7.28e+01 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 2p2wA 367 7.37e+01 1ao7B 100 7.38e+01 1agdB b.1.1.2 20697 2qdfA 335 7.44e+01 1y63A 184 7.45e+01 c.37.1.1 116494 2j1oA 268 7.55e+01 1agdB 99 7.68e+01 1agdB b.1.1.2 20742 1tfjA 219 7.77e+01 2qtdA 105 7.83e+01