# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h6fA 193 6.84e-02 b.2.5.4 70901 3ckaA 320 2.16e+00 1xzzA 246 2.34e+00 3kljA 385 3.69e+00 1sr4C 166 3.88e+00 b.42.2.1 105950 1tvjA 166 5.81e+00 2pjkA 178 7.49e+00 3caxA 369 7.86e+00 3iwtA 178 8.19e+00 1k5nB 100 9.79e+00 b.1.1.2 77268 3byqA 193 9.99e+00 d.79.9.1 155728 1agdB 99 9.99e+00 1agdB b.1.1.2 20742 1pkhA 204 1.06e+01 b.85.4.1 94832 1sb2A 133 1.09e+01 d.169.1.1 118927 1ao7B 100 1.21e+01 1agdB b.1.1.2 20697 2f2fC 186 1.34e+01 b.42.2.1 132812 1bxvA 91 1.40e+01 1aac b.6.1.1 22875 2qtdA 105 1.48e+01 2q9kA 151 1.49e+01 2c6cA 707 1.53e+01 a.48.2.1,c.8.4.1,c.56.5.5 129989,129990,129991 2p45B 123 1.57e+01 2ootA 709 1.60e+01 a.48.2.1,c.8.4.1,c.56.5.5 139176,139177,139178 1w0dA 337 1.65e+01 c.77.1.1 114060 3bi1A 709 1.66e+01 a.48.2.1,c.8.4.1,c.56.5.5 155295,155296,155297 1l0iA 78 1.69e+01 a.28.1.1 77643 1t8kA 77 1.70e+01 a.28.1.1 106666 2c36A 285 1.79e+01 1sa3A 262 1.95e+01 c.52.1.23 105400 1dleA 298 2.00e+01 1dleA b.47.1.2 26312 2or4A 709 2.01e+01 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 3ihkA 218 2.05e+01 2okvA 209 2.08e+01 2dp3A 257 2.13e+01 2g0qA 173 2.14e+01 3fq0A 157 2.32e+01 2cg4A 152 2.45e+01 a.4.5.32,d.58.4.2 130417,130418 1b78A 193 2.48e+01 1b78A c.51.4.1 33221 2qenA 350 2.57e+01 3lqyA 190 2.64e+01 1of5B 184 2.71e+01 d.17.4.2 86934 3a58A 320 2.73e+01 3itaA 352 2.73e+01 1tmcA 175 2.74e+01 1agdA d.19.1.1 38258 3lx6A 410 2.89e+01 3f0uX 157 2.92e+01 2w9hA 159 2.94e+01 3fjyA 364 3.02e+01 2w3jA 145 3.07e+01 3gfaA 198 3.14e+01 2amuA 143 3.26e+01 2z4iA 233 3.43e+01 3gisX 121 3.52e+01 1u8sA 192 3.57e+01 d.58.18.5,d.58.18.5 107737,107738 1jjoC 261 3.77e+01 1xxgA 233 3.79e+01 2wuhA 178 3.87e+01 1dmgA 225 3.90e+01 1dmgA c.22.1.1 31036 3f02A 359 3.92e+01 1hsbA 270 4.10e+01 1agdA b.1.1.2,d.19.1.1 20736,38257 1b5fA 239 4.21e+01 1smrA b.50.1.2 26836 1yo6A 250 4.35e+01 c.2.1.2 123769 1di6A 195 4.45e+01 1di6A c.57.1.1 33863 1wmmA 145 4.45e+01 b.122.1.8 121049 2ethA 154 4.59e+01 a.4.5.28 132358 1guzA 310 4.77e+01 c.2.1.5,d.162.1.1 65586,65587 1h5pA 95 4.80e+01 1h5pA d.217.1.1 60642 3bhxA 709 4.86e+01 a.48.2.1,c.8.4.1,c.56.5.5 155289,155290,155291 1k77A 260 4.97e+01 c.1.15.5 72096 2ffgA 87 4.98e+01 d.317.1.1 133383 2kieA 124 4.98e+01 1wyzA 242 5.01e+01 c.90.1.1 121471 2hkdA 320 5.09e+01 1xg8A 111 5.13e+01 c.47.1.17 115283 1ej2A 181 5.20e+01 1f9aA c.26.1.3 59414 3fedA 707 5.30e+01 2z14A 133 5.32e+01 1w15A 153 5.34e+01 b.7.1.2 109041 1p35A 299 5.35e+01 1p35A b.28.1.1 23925 2i5vO 251 5.36e+01 2klaA 106 5.42e+01 1qhoA 686 5.48e+01 1cxlA b.1.18.2,b.3.1.1,b.71.1.1,c.1.8.1 21844,22513,27751,28738 2hejA 323 5.52e+01 2cz9A 350 5.56e+01 3me5A 482 5.62e+01 3dshA 246 5.71e+01 2ehsA 77 5.75e+01 1xovA 326 5.85e+01 b.34.11.4,c.56.5.6 122206,122207 3gfkA 131 5.88e+01 2w1vA 276 5.89e+01 1jb0D 138 5.89e+01 1jb0D d.187.1.1 62823 2dejA 350 5.95e+01 1hybA 181 6.25e+01 1f9aA c.26.1.3 61399 2fhqA 141 6.28e+01 b.45.1.1 133497 1tbfA 347 6.30e+01 a.211.1.2 106743 2oy7A 320 6.30e+01 1kyqA 274 6.33e+01 c.2.1.11,e.37.1.1 73281,73282 2yuhA 179 6.38e+01 1m8jA 181 6.59e+01 c.26.1.3 84875 2vxvL 214 6.62e+01 1z3eA 132 6.65e+01 c.47.1.12 124400 1sf9A 128 6.94e+01 b.34.15.1 98831 2kgyA 102 6.94e+01 1lfpA 249 6.98e+01 e.39.1.1 73885 2zigA 297 7.06e+01 1ylkA 172 7.08e+01 3hc8A 324 7.17e+01 1gz6A 319 7.32e+01 c.2.1.2 76410 2vzpA 127 7.48e+01 2kdxA 119 7.59e+01 2wscN 170 7.64e+01 1xo5A 183 7.70e+01 a.39.1.5 115680 3cbxA 105 7.71e+01 2v0vA 194 7.76e+01 3cjxA 165 7.87e+01 3k63A 126 7.95e+01 1x6zA 123 7.98e+01 d.24.1.1 121763