# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ms9A 648 2.82e-04 b.29.1.15,b.68.1.1 85088,85089 3flpA 217 3.17e-04 1n1tA 641 3.52e-04 b.29.1.15,b.68.1.1 79821,79822 2v73A 191 2.19e-01 3hpyA 309 2.27e-01 2w08A 204 6.09e-01 1sacA 204 6.52e-01 1sacA b.29.1.5 24237 3ginA 160 6.67e-01 2jd4A 383 7.12e-01 2hesX 330 7.46e-01 2erfA 209 1.04e+00 b.29.1.4 132287 2dpkA 152 1.09e+00 b.1.27.1 131616 2gopA 347 1.61e+00 1mpyA 307 1.68e+00 1mpyA d.32.1.3,d.32.1.3 38508,38509 2vu9A 444 1.70e+00 2agyA 361 1.71e+00 2oizA 361 1.76e+00 3bp5B 202 2.01e+00 2iaaA 390 2.06e+00 3e7jA 749 2.31e+00 2zuxA 591 2.36e+00 3hmyA 450 2.56e+00 1a8d 452 2.66e+00 1a8d 1a8dA 452 2.66e+00 b.29.1.6,b.42.4.2 24262,25607 3bp6B 202 2.74e+00 2vxrA 482 2.96e+00 3b4nA 344 2.97e+00 2bibA 547 3.04e+00 b.109.1.1,d.157.1.8 128581,128582 3dlqR 211 3.10e+00 1epwA 1290 3.15e+00 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 3immA 201 3.19e+00 2fuqA 747 3.19e+00 2p5zX 491 3.47e+00 b.40.8.1,b.106.1.1,b.106.1.1 149263,149264,149265 1ac5 483 3.54e+00 1ac5 1ac5A 483 3.54e+00 c.69.1.5 34653 2z8rA 591 3.66e+00 1bxoA 323 4.71e+00 2er7E b.50.1.2 26805 1nwpA 128 4.83e+00 1nwpA b.6.1.1 23011 1qtfA 246 5.09e+00 1agjA b.47.1.1 25830 2rr3A 130 6.29e+00 1z9lA 128 6.85e+00 1dykA 394 7.09e+00 1dykA b.29.1.4,b.29.1.4 24223,24224 3igqA 201 7.15e+00 3cihA 739 7.41e+00 1d2sA 170 8.15e+00 1d2sA b.29.1.4 24221 2p2sA 336 8.16e+00 1sh8A 154 8.63e+00 d.38.1.5 105549 1qqgA 264 8.63e+00 1qqgA b.55.1.2,b.55.1.2 26987,26988 3ks7A 397 8.89e+00 2qvkA 192 1.12e+01 2wanA 921 1.13e+01 3esgA 193 1.19e+01 2arrA 382 1.23e+01 1t4wA 196 1.29e+01 b.2.5.2 106427 1tt8A 164 1.30e+01 d.190.1.1 112635 3dhpA 496 1.31e+01 b.71.1.1,c.1.8.1 157725,157726 3frxA 319 1.36e+01 1smd 496 1.36e+01 1smd 2qdrA 303 1.37e+01 1smdA 496 1.39e+01 b.71.1.1,c.1.8.1 27768,28755 1gbg 214 1.40e+01 1axkA 1gbgA 214 1.40e+01 b.29.1.2 24171 2ayh 214 1.42e+01 1axkA 2ayhA 214 1.42e+01 b.29.1.2 24172 2odlA 373 1.50e+01 1o4yA 288 1.51e+01 b.29.1.2 92473 3hrpA 409 1.55e+01 3fnsA 332 1.61e+01 1gpiA 431 1.62e+01 b.29.1.10 65450 1f5fA 205 1.73e+01 1d2sA b.29.1.4 24222 2co7B 221 1.82e+01 b.1.11.1,b.7.2.1 145049,145050 2j8gA 339 1.88e+01 b.109.1.1,c.1.8.8 147915,147916 1qxmA 300 1.89e+01 b.42.2.1,b.42.2.1 96533,96534 2w5yA 192 1.92e+01 1utcA 363 2.12e+01 a.118.1.4,b.69.6.1 99914,99915 2ix2A 249 2.18e+01 2cspA 130 2.21e+01 b.1.2.1 130779 1pgs 314 2.23e+01 1pgs 1pgsA 314 2.23e+01 b.121.1.1,b.121.1.1 23653,23654 3ij8A 496 2.26e+01 1jrrA 382 2.33e+01 e.1.1.1 63256 1jofA 365 2.41e+01 b.69.10.1 71775 2p86A 215 2.48e+01 2bpa2 175 2.51e+01 2bpa2 2j66A 428 2.54e+01 2dddA 225 2.56e+01 2ww8A 893 2.60e+01 2gagA 965 2.64e+01 1ii7A 333 2.65e+01 1ii7A d.159.1.4 62415 1x0cA 549 2.69e+01 2kc5A 162 2.74e+01 2z8gA 549 2.78e+01 2zxqA 1376 2.83e+01 3elqA 571 2.87e+01 1hx0A 496 2.90e+01 b.71.1.1,c.1.8.1 61346,61347 3inbA 466 2.97e+01 2wnxA 170 2.99e+01 2jyaA 106 3.02e+01 3ilfA 268 3.07e+01 3ik5A 143 3.08e+01 1yu0A 381 3.09e+01 b.163.1.1,d.169.1.8 124025,124026 2p3yA 491 3.09e+01 e.65.1.1 149190 3lm8A 222 3.17e+01 1yoxA 250 3.18e+01 b.82.5.2 123789 2b59A 187 3.19e+01 b.2.2.2 127879 3bwuC 205 3.19e+01 b.1.11.1,b.7.2.1 155699,155700 3f85A 463 3.20e+01 1behA 187 3.22e+01 1a44 b.17.1.1 23700 3eamA 317 3.23e+01 1h09A 338 3.23e+01 b.109.1.1,c.1.8.8 83420,83421 1zsoA 164 3.26e+01 b.166.1.1 125610 1rcqA 357 3.31e+01 b.49.2.2,c.1.6.1 104882,104883 2b5uA 551 3.32e+01 b.101.1.1,b.110.1.1,h.4.9.1 127906,127907,127908 3blcA 330 3.32e+01 1tf4A 605 3.35e+01 1tf4A a.102.1.2,b.2.2.2 18827,22393 3hr9A 241 3.35e+01 3bbjA 272 3.43e+01 3ft0A 129 3.47e+01 3h0oA 240 3.49e+01 2fwuA 157 3.50e+01 b.1.27.1 134262 3dohA 380 3.53e+01 1jzgA 128 3.54e+01 b.6.1.1 67855 1pz7A 204 3.54e+01 b.29.1.4 95405 1wj9A 211 3.65e+01 d.58.53.1,d.58.53.1 114694,114695 3bs6A 280 3.68e+01 1qs1A 462 3.73e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 3fswA 128 3.75e+01 2ft6A 124 3.77e+01 1upsA 420 3.79e+01 b.29.1.2,b.42.2.3 113394,113395 3fsvA 127 3.80e+01 2bm3A 166 3.82e+01 b.2.2.2 128762 3dsmA 328 3.82e+01 1pmhX 185 3.84e+01 b.18.1.18 104193 3ls3A 235 3.84e+01 1bn8A 420 3.84e+01 1pcl b.80.1.1 28022 2azaA 129 3.97e+01 1nwpA b.6.1.1 22901 1a4aA 129 3.97e+01 1nwpA b.6.1.1 22907 1pmjX 185 4.09e+01 b.18.1.18 104194 2r16A 182 4.10e+01 1f3uB 171 4.11e+01 1f3uB b.65.1.1 27525 1zv9A 172 4.12e+01 b.2.2.2 125700 1dpjA 329 4.15e+01 1smrA b.50.1.2 26828 3bwzA 181 4.17e+01 3gc3B 363 4.22e+01 1s8eA 333 4.23e+01 d.159.1.4 105368 3eniA 365 4.33e+01 1jmxA 494 4.35e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1x54A 434 4.35e+01 2w07A 218 4.49e+01 1xb3A 128 4.56e+01 b.6.1.1 115060 1nqjA 119 4.62e+01 b.23.2.1 86031 1aly 146 4.62e+01 1aly 1alyA 146 4.62e+01 b.22.1.1 23856 1xssA 225 4.63e+01 1qznA 173 4.66e+01 b.2.2.2 104669 3fz3A 531 4.72e+01 1n0lA 224 4.78e+01 b.1.11.1,b.7.2.1 79744,79745 1qpxA 218 4.78e+01 1qpxA b.1.11.1,b.7.2.1 22318,23200 1a12A 413 4.79e+01 1a12A b.69.5.1 27663 2o04A 399 4.85e+01 3dsdA 349 4.86e+01 1iqyA 638 4.91e+01 b.30.2.1,d.17.2.1,d.17.2.1 76763,76764,76765 1oh4A 179 4.93e+01 b.18.1.18 92978 2j2zA 218 4.95e+01 b.1.11.1,b.7.2.1 137974,137975 3ah2A 288 5.00e+01 1f0lA 535 5.02e+01 1ddt b.2.1.1,d.166.1.1,f.1.2.1 22377,42239,43382 1a6cA 513 5.02e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 3iu7A 288 5.02e+01 2b5iC 199 5.03e+01 b.1.2.1,b.1.2.1 127898,127899 2bo9B 222 5.03e+01 d.17.1.5,d.17.1.5 128898,128899 1ze3C 205 5.16e+01 b.1.11.1,b.7.2.1 124974,124975 1gu3A 149 5.25e+01 b.18.1.14 76350 3erbA 223 5.25e+01 1uaiA 224 5.33e+01 b.29.1.18 107761 3kg7A 293 5.35e+01 1pieA 419 5.39e+01 d.14.1.5,d.58.26.7 94706,94707 1wzlA 585 5.43e+01 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1r4xA 275 5.51e+01 b.1.10.3,d.105.1.2 97054,97055 2klsA 164 5.68e+01 1v70A 105 5.70e+01 b.82.1.9 113555 2fauA 341 5.72e+01 3ch3X 265 5.77e+01 1bf2 750 5.84e+01 1bf2 1bf2A 750 5.84e+01 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 3kh0A 140 5.87e+01 3b9eA 584 6.00e+01 1gotB 340 6.01e+01 1tbgA b.69.4.1 27648 2apr 325 6.02e+01 2er7E 2aprA 325 6.02e+01 b.50.1.2 26819 1vh4A 435 6.10e+01 b.80.6.1 100640 1tqyB 415 6.10e+01 c.95.1.1,c.95.1.1 107247,107248 1h9sA 140 6.11e+01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1h6fA 193 6.13e+01 b.2.5.4 70901 3f75A 224 6.15e+01 3kyaA 496 6.18e+01 2ie2A 222 6.31e+01 2iqyA 190 6.33e+01 2r58A 265 6.39e+01 1efnB 152 6.57e+01 1efnB d.102.1.1 40699 3gh5A 525 6.61e+01 1tyjA 170 6.68e+01 b.2.2.2 119390 3fsaA 125 6.72e+01 3psgA 370 6.76e+01 b.50.1.2 26841 1r0mA 375 6.79e+01 c.1.11.2,d.54.1.1 104747,104748 2fp8A 322 6.84e+01 2gnqA 336 6.84e+01 2ccwA 129 6.96e+01 b.6.1.1 130259 3dlbA 685 7.17e+01 1sq9A 397 7.17e+01 b.69.4.1 105889 1cuoA 129 7.20e+01 1nwpA b.6.1.1 23015 2g19A 244 7.22e+01 2r9qA 370 7.23e+01 2zu0A 423 7.23e+01 1h6lA 353 7.37e+01 b.68.3.1 60687 1yo8A 634 7.37e+01 2r5kA 424 7.40e+01 3ejkA 174 7.57e+01 2o62A 270 7.64e+01 b.60.1.9,b.60.1.9 148622,148623 2i0kA 561 7.66e+01 d.58.32.3,d.145.1.1 147480,147481 3eaaA 163 7.68e+01 2vy0A 264 7.71e+01 1y43B 173 7.76e+01 1crzA 403 7.76e+01 1crzA b.68.4.1,c.51.2.1 27629,33211 2o0tA 467 7.78e+01 1uliB 187 7.92e+01 d.17.4.4 107923 2uwiA 142 7.93e+01 2bnuA 203 7.99e+01