# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.soe.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ms9A 648 6.56e-04 b.29.1.15,b.68.1.1 85088,85089 3flpA 217 1.53e-03 1n1tA 641 4.40e-03 b.29.1.15,b.68.1.1 79821,79822 3hpyA 309 6.63e-01 2v73A 191 7.85e-01 3immA 201 1.07e+00 1dykA 394 1.20e+00 1dykA b.29.1.4,b.29.1.4 24223,24224 3e7jA 749 1.24e+00 2hesX 330 1.34e+00 2jd4A 383 1.40e+00 3ginA 160 1.42e+00 2fuqA 747 1.45e+00 2bibA 547 1.48e+00 b.109.1.1,d.157.1.8 128581,128582 1tt8A 164 1.61e+00 d.190.1.1 112635 2dpkA 152 1.78e+00 b.1.27.1 131616 1epwA 1290 2.20e+00 b.29.1.6,b.42.4.2,d.92.1.7,h.4.2.1 24269,25614,40305,45785 2erfA 209 2.23e+00 b.29.1.4 132287 3b4nA 344 2.48e+00 2p5zX 491 2.66e+00 b.40.8.1,b.106.1.1,b.106.1.1 149263,149264,149265 2gopA 347 2.74e+00 1mpyA 307 2.74e+00 1mpyA d.32.1.3,d.32.1.3 38508,38509 3bp6B 202 2.96e+00 2ebn 289 3.00e+00 2ebn 2ebnA 289 3.00e+00 c.1.8.5 28990 2w08A 204 3.17e+00 3bp5B 202 3.23e+00 1sacA 204 3.37e+00 1sacA b.29.1.5 24237 1zsoA 164 3.51e+00 b.166.1.1 125610 1utcA 363 3.95e+00 a.118.1.4,b.69.6.1 99914,99915 2zuxA 591 4.16e+00 2p2sA 336 5.06e+00 2z8rA 591 6.84e+00 1sh8A 154 6.88e+00 d.38.1.5 105549 3ik2A 517 7.19e+00 3hrpA 409 8.75e+00 1qqgA 264 9.32e+00 1qqgA b.55.1.2,b.55.1.2 26987,26988 1dboA 506 9.50e+00 1dbgA b.80.1.4 28034 1dbgA 506 1.00e+01 1dbgA b.80.1.4 28033 1gpiA 431 1.01e+01 b.29.1.10 65450 3hmyA 450 1.04e+01 3cihA 739 1.04e+01 2wanA 921 1.09e+01 2oizA 361 1.09e+01 2agyA 361 1.09e+01 3fnsA 332 1.10e+01 1a8d 452 1.10e+01 1a8d 1a8dA 452 1.10e+01 b.29.1.6,b.42.4.2 24262,25607 3igqA 201 1.23e+01 2vxrA 482 1.30e+01 1d2sA 170 1.31e+01 1d2sA b.29.1.4 24221 2iaaA 390 1.32e+01 2gagA 965 1.38e+01 1ac5 483 1.40e+01 1ac5 1ac5A 483 1.40e+01 c.69.1.5 34653 1yu4A 381 1.47e+01 b.163.1.1,d.169.1.8 124033,124034 1gbg 214 1.50e+01 1axkA 1gbgA 214 1.50e+01 b.29.1.2 24171 3g04C 239 1.51e+01 2vu9A 444 1.53e+01 1nwpA 128 1.54e+01 1nwpA b.6.1.1 23011 2j66A 428 1.56e+01 1dypA 271 1.67e+01 1dypA b.29.1.2 24185 1wriA 93 1.74e+01 d.15.4.1 114838 3dsmA 328 1.75e+01 1qtfA 246 1.75e+01 1agjA b.47.1.1 25830 3frxA 319 1.77e+01 2rr3A 130 1.78e+01 1qxmA 300 1.81e+01 b.42.2.1,b.42.2.1 96533,96534 3gc3B 363 1.83e+01 2qvkA 192 1.86e+01 1r0mA 375 1.99e+01 c.1.11.2,d.54.1.1 104747,104748 3ah2A 288 1.99e+01 2biiA 424 2.15e+01 1z9lA 128 2.18e+01 1f3uB 171 2.21e+01 1f3uB b.65.1.1 27525 2ayh 214 2.33e+01 1axkA 2ayhA 214 2.33e+01 b.29.1.2 24172 3hwjA 172 2.35e+01 2qdrA 303 2.44e+01 3juuA 280 2.44e+01 2bpa2 175 2.48e+01 2bpa2 1yu1A 381 2.50e+01 b.163.1.1,d.169.1.8 124027,124028 3dlqR 211 2.55e+01 1yu2A 381 2.57e+01 b.163.1.1,d.169.1.8 124029,124030 1ddjA 247 2.68e+01 5ptp b.47.1.2 26362 2cspA 130 2.72e+01 b.1.2.1 130779 2azaA 129 2.78e+01 1nwpA b.6.1.1 22901 1yu0A 381 2.78e+01 b.163.1.1,d.169.1.8 124025,124026 1oflA 481 2.85e+01 b.80.1.4 103934 1f5fA 205 2.85e+01 1d2sA b.29.1.4 24222 2zu0A 423 2.92e+01 1yu3A 381 2.93e+01 b.163.1.1,d.169.1.8 124031,124032 3esgA 193 2.93e+01 2dddA 225 2.96e+01 2p3yA 491 3.07e+01 e.65.1.1 149190 3ejkA 174 3.17e+01 1bf2 750 3.20e+01 1bf2 1bf2A 750 3.20e+01 b.1.18.2,b.71.1.1,c.1.8.1 21860,27787,28774 3ilfA 268 3.34e+01 1bxoA 323 3.39e+01 2er7E b.50.1.2 26805 1jofA 365 3.40e+01 b.69.10.1 71775 1vh4A 435 3.47e+01 b.80.6.1 100640 2hmaA 376 3.50e+01 1aohA 147 3.51e+01 1aohA b.2.2.2 22401 1mveA 243 3.55e+01 b.29.1.2 85140 1kxvC 121 3.56e+01 b.1.1.1 73190 1h6fA 193 3.59e+01 b.2.5.4 70901 3achA 203 3.63e+01 2zxqA 1376 3.64e+01 2oq5A 232 3.74e+01 1cs6A 382 3.83e+01 1cs6A b.1.1.4,b.1.1.4,b.1.1.4,b.1.1.4 21760,21761,21762,21763 2odlA 373 3.84e+01 3dhpA 496 3.89e+01 b.71.1.1,c.1.8.1 157725,157726 2wnxA 170 4.07e+01 2jyaA 106 4.09e+01 1pgs 314 4.13e+01 1pgs 1pgsA 314 4.13e+01 b.121.1.1,b.121.1.1 23653,23654 1oh4A 179 4.13e+01 b.18.1.18 92978 2i0kA 561 4.18e+01 d.58.32.3,d.145.1.1 147480,147481 1smd 496 4.20e+01 1smd 3eamA 317 4.25e+01 1i19A 561 4.36e+01 1i19A d.58.32.3,d.145.1.1 61522,61523 1smdA 496 4.37e+01 b.71.1.1,c.1.8.1 27768,28755 1bpoA 494 4.43e+01 1bpoA a.118.1.4,b.69.6.1 19143,27670 2ww8A 893 4.49e+01 1kmtA 141 4.55e+01 b.1.18.8 77442 3kn3A 242 4.59e+01 1ee6A 197 4.62e+01 1ee6A b.80.1.1 28024 2dv6A 447 4.68e+01 2z8zA 617 4.75e+01 2oq0A 206 4.76e+01 b.40.16.1,b.40.16.1 148970,148971 1uaiA 224 4.83e+01 b.29.1.18 107761 2qyfB 240 5.02e+01 1aly 146 5.08e+01 1aly 1alyA 146 5.08e+01 b.22.1.1 23856 1oewA 329 5.10e+01 b.50.1.2 86924 2klsA 164 5.12e+01 1nqjA 119 5.14e+01 b.23.2.1 86031 2vgeA 229 5.19e+01 2o8lA 274 5.27e+01 b.47.1.1 138932 2r16A 182 5.31e+01 3erbA 223 5.33e+01 2uwiA 142 5.34e+01 1a6cA 513 5.45e+01 1a6cA b.121.4.2,b.121.4.2,b.121.4.2 23296,23297,23298 1hx0A 496 5.47e+01 b.71.1.1,c.1.8.1 61346,61347 1ywkA 289 5.51e+01 b.82.1.13 124155 1yo8A 634 5.52e+01 3psgA 370 5.54e+01 b.50.1.2 26841 2p4mA 219 5.57e+01 1h9sA 140 5.60e+01 1b9mA b.40.6.2,b.40.6.2 60843,60844 1a4aA 129 5.64e+01 1nwpA b.6.1.1 22907 1bn8A 420 5.90e+01 1pcl b.80.1.1 28022 2k4nA 111 5.97e+01 3ik5A 143 5.98e+01 3hr9A 241 6.06e+01 2vy0A 264 6.09e+01 1sfnA 246 6.11e+01 b.82.1.11 105496 2b59A 187 6.14e+01 b.2.2.2 127879 3fz3A 531 6.24e+01 2fwuA 157 6.25e+01 b.1.27.1 134262 2fauA 341 6.27e+01 2d5wA 603 6.41e+01 2og4A 254 6.46e+01 2c9oA 456 6.47e+01 3h0oA 240 6.51e+01 2nncA 124 6.53e+01 2arrA 382 6.68e+01 2bm3A 166 6.71e+01 b.2.2.2 128762 2p0kA 212 6.73e+01 3h2tA 335 6.75e+01 1pz7A 204 6.93e+01 b.29.1.4 95405 1rsy 152 6.99e+01 1rsy 1rsyA 152 6.99e+01 b.7.1.2 23192 3beuA 224 7.07e+01 3d3aA 612 7.18e+01 2bnuA 203 7.30e+01 1uliB 187 7.32e+01 d.17.4.4 107923 3hvnA 508 7.33e+01 2er7E 330 7.42e+01 2er7E b.50.1.2 26779 1wzlA 585 7.50e+01 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1z3sA 217 7.55e+01 2qv3A 457 7.60e+01 3i6tA 381 7.72e+01 3ir8A 221 7.79e+01 1h6lA 353 7.91e+01 b.68.3.1 60687 2z8xA 617 7.95e+01 1dpjA 329 8.00e+01 1smrA b.50.1.2 26828