Best Alignments for T0547

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

Template	Template E-value	A2M alignment	SCOP Domain(s)
1hkvA	5.3545e-56	1hkvA/T0547-1hkvA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.3 c.1.6.1
2o0tA	1.7858e-53	2o0tA/T0547-2o0tA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2p3eA	4.6308e-50	2p3eA/T0547-2p3eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2pljA	1.1168e-47	2pljA/T0547-2pljA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2j66A	1.2390e-47	2j66A/T0547-2j66A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1twiA	1.5991e-46	1twiA/T0547-1twiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.3 c.1.6.1
1tufA	2.9131e-46	1tufA/T0547-1tufA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.3 c.1.6.1
1knwA	1.0700e-45	1knwA/T0547-1knwA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.3 c.1.6.1
2yxxA	8.7276e-44	2yxxA/T0547-2yxxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2qghA	2.4809e-41	2qghA/T0547-2qghA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1d7kA	3.5486e-40	1d7kA/T0547-1d7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.3 c.1.6.1
2nvaA	1.4708e-39	2nvaA/T0547-2nvaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
7odcA	3.4048e-39	7odcA/T0547-7odcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.3 c.1.6.1
3llxA	9.8788e-08	3llxA/T0547-3llxA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1xfcA	3.9972e-07	1xfcA/T0547-1xfcA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1vfsA	9.3201e-07	1vfsA/T0547-1vfsA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.2 c.1.6.1
3gwqA	1.8876e-06	3gwqA/T0547-3gwqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
3e6eA	8.3184e-06	3e6eA/T0547-3e6eA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
2dy3A	2.3547e-05	2dy3A/T0547-2dy3A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m
1bd0A	4.8693e-05	1bd0A/T0547-1bd0A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m	b.49.2.2 c.1.6.1

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001