# List of top-scoring protein chains for T0547.t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
2p3eA	420	1.04e-38		
1twiA	434	8.36e-37	b.49.2.3,c.1.6.1	107399,107400
1tufA	434	8.38e-37	b.49.2.3,c.1.6.1	107335,107336
2qghA	425	8.82e-36		
3c5qA	425	1.14e-35		
2o0tA	467	2.58e-34		
1hkvA	453	2.76e-34	b.49.2.3,c.1.6.1	83559,83560
2yxxA	386	4.70e-32		
1knwA	425	3.42e-30	b.49.2.3,c.1.6.1	90969,90970
2j66A	428	8.54e-30		
2oo0A	471	9.84e-28		
2on3A	461	9.89e-28		
1d7kA	421	1.45e-27	b.49.2.3,c.1.6.1	26486,28648
7odcA	424	2.22e-27	b.49.2.3,c.1.6.1	26488,28650
1f3tA	425	3.22e-27	b.49.2.3,c.1.6.1	26493,28655
1njjA	425	3.23e-27	b.49.2.3,c.1.6.1	91905,91906
2pljA	419	4.07e-27		
1szrA	425	5.69e-27	b.49.2.3,c.1.6.1	112174,112175
2todA	425	1.60e-26	b.49.2.3,c.1.6.1	26489,28651
2nvaA	372	1.73e-24		
2nv9A	372	2.55e-24		
3btnA	448	9.57e-23		
2dy3A	361	0.9265		
3cpgA	282	2.039		
3llxA	376	2.536		
3gwqA	426	4.196		
1xysA	347	10.98	c.1.8.3	28903
1e5nA	348	10.99	c.1.8.3	28904
1w2vA	348	11.09	c.1.8.3	114104
1j0aA	325	11.22	c.79.1.1	83871
1w32A	348	11.26	c.1.8.3	114120
1w3hA	359	11.53	c.1.8.3	114140
1clxA	347	11.78	c.1.8.3	28899
1w2pA	348	11.79	c.1.8.3	114102
3adnA	294	13.64		
1xfcA	384	19.10		
2odoA	357	33.03		
1wn2A	121	35.73		
3hx4A	508	43.08		
3ku2A	507	43.12		
3i7cA	484	43.83		
1v5dA	386	68.82	a.102.1.2	113537
2vd8A	391	71.00		
3ha1A	397	72.67		
2q5cA	196	75.23		
2o7rA	338	78.50		
1nq6A	302	78.61	c.1.8.3	92046
1rcqA	357	80.61	b.49.2.2,c.1.6.1	104882,104883
3b8vA	379	82.75		
3b8wA	379	84.24		
3b8uA	379	84.79		
2rjhA	379	85.68		
3b8tA	379	85.90		
2yyoA	171	88.98