# List of top-scoring protein chains for t2k-w0.5-1-str2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 5.58e-48 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 9.85e-48 b.49.2.3,c.1.6.1 107335,107336 1hkvA 453 1.09e-47 b.49.2.3,c.1.6.1 83559,83560 2o0tA 467 3.23e-47 2qghA 425 1.99e-46 2j66A 428 6.13e-46 2p3eA 420 4.66e-45 1knwA 425 3.36e-44 b.49.2.3,c.1.6.1 90969,90970 1d7kA 421 1.72e-43 b.49.2.3,c.1.6.1 26486,28648 2pljA 419 1.76e-43 2yxxA 386 2.43e-43 2nvaA 372 1.92e-42 7odcA 424 3.76e-41 b.49.2.3,c.1.6.1 26488,28650 1vfsA 386 4.45e-08 b.49.2.2,c.1.6.1 108584,108585 1xfcA 384 4.68e-08 3gwqA 426 1.59e-07 3e6eA 371 3.13e-07 2dy3A 361 7.18e-07 1bd0A 388 1.21e-06 b.49.2.2,c.1.6.1 26480,28642 3llxA 376 2.32e-06 3kw3A 376 2.98e-06 3co8A 380 5.42e-06 2vd8A 391 1.24e-05 1rcqA 357 5.09e-05 b.49.2.2,c.1.6.1 104882,104883 3hurA 395 8.60e-05 1w8gA 234 0.001350 3cpgA 282 0.01153 3lhlA 287 0.4950 1ct5A 256 0.6564 c.1.6.2 28663 1j6pA 418 1.248 b.92.1.4,c.1.9.9 77089,77090 3kwsA 287 1.348 1wohA 305 2.521 c.42.1.1 109446 1p1mA 406 3.365 b.92.1.4,c.1.9.9 87696,87697 1ur4A 399 6.211 c.1.8.3 113402 1thfD 253 7.898 c.1.2.1 28535 1whvA 100 9.95 d.58.7.1 114652 2ef5A 290 11.68 1eceA 358 12.04 c.1.8.3 28813 1vbuA 328 12.10 c.1.8.3 119963 3cqjA 295 12.34 2cevA 299 15.03 c.42.1.1 32576 1igs 248 15.60 1n82A 331 15.79 c.1.8.3 91703 1i60A 278 17.55 c.1.15.4 71118 1ta3B 303 20.19 c.1.8.3 106732 2aebA 322 20.66 c.42.1.1 126617 1tv8A 340 21.20 c.1.28.3 107352 1k1eA 180 23.92 c.108.1.5 67995 1qumA 285 24.71 c.1.15.1 29393 1gqnA 252 25.30 c.1.10.1 90514 3dx5A 286 26.13 2wm8A 187 26.51 1xfkA 336 26.78 c.42.1.1 115264 3e49A 311 26.94 1v0lA 313 27.63 c.1.8.3 108207 1wn2A 121 27.73 1rlkA 117 28.38 c.131.1.1 97651 3hnoA 419 28.50 1nq6A 302 30.45 c.1.8.3 92046 2r47A 157 30.85 1hjsA 332 31.17 c.1.8.3 83492 3m1rA 322 31.67 2ac2A 309 31.79 3i42A 127 31.83 1ur1A 378 35.10 c.1.8.3 99804 3ju2A 284 36.15 3c4uA 307 37.01 1y0pA 571 38.13 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 3b5vA 248 38.69 3lteA 132 41.28 2puzA 419 43.03 b.92.1.10,c.1.9.17 149873,149874 3lnpA 468 43.04 1hv8A 367 45.15 c.37.1.19,c.37.1.19 32405,32406 2ac4A 309 45.26 1r85A 379 46.15 c.1.8.3 104839 2zv3A 115 48.18 1u69A 163 50.86 d.32.1.7 107699 1xtyA 120 52.66 1fobA 334 53.65 c.1.8.3 83255 3d6kA 422 53.82 1li4A 432 54.18 c.2.1.4,c.23.12.3 84616,84617 1xyfA 436 55.55 b.42.2.1,c.1.8.3 25577,28909 2adbA 148 56.05 d.58.7.1 126581 1vzwA 244 57.04 c.1.2.1 120553 1a53 247 57.92 3e02A 311 61.99 1q7sA 117 65.31 c.131.1.1 96055 3erjA 123 67.04 c.131.1.1 158193 1i4nA 251 67.27 c.1.2.4 71114 1xx1A 285 67.43 2yx0A 342 68.72 1u7pA 164 68.76 c.108.1.17 113095 3inpA 246 68.80 1dozA 309 68.90 c.92.1.1 35592 2ywiA 196 69.35 1odzA 386 70.86 c.1.8.3 86889 3guvA 167 75.59 1xyzA 347 76.97 c.1.8.3 28804 1vc4A 254 78.68 c.1.2.4 100557 3hgjA 349 80.38 1gq6A 313 83.24 c.42.1.1 70341 2h1vA 310 83.57 1ps9A 671 84.22 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2af4C 333 87.73 c.77.1.5 126656 1vh7A 265 87.82 c.1.2.1 100646 1bhgA 613 88.86 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 3grcA 140 89.06 3a10A 116 89.59