# List of top-scoring protein chains for t2k-w0.5-1-pb-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 4.48e-47 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 4.57e-47 b.49.2.3,c.1.6.1 107335,107336 1hkvA 453 7.62e-47 b.49.2.3,c.1.6.1 83559,83560 2o0tA 467 1.15e-46 2qghA 425 1.99e-45 2p3eA 420 8.92e-45 2j66A 428 1.08e-44 1knwA 425 2.43e-43 b.49.2.3,c.1.6.1 90969,90970 1d7kA 421 4.46e-43 b.49.2.3,c.1.6.1 26486,28648 2pljA 419 4.97e-43 2yxxA 386 2.50e-42 2nvaA 372 7.65e-42 7odcA 424 2.14e-40 b.49.2.3,c.1.6.1 26488,28650 1xfcA 384 2.97e-08 1vfsA 386 5.04e-08 b.49.2.2,c.1.6.1 108584,108585 3e6eA 371 4.84e-07 3llxA 376 5.38e-07 2dy3A 361 8.25e-07 3kw3A 376 1.38e-06 3gwqA 426 1.53e-06 1bd0A 388 1.54e-06 b.49.2.2,c.1.6.1 26480,28642 3co8A 380 8.57e-06 2vd8A 391 5.14e-05 1rcqA 357 6.23e-05 b.49.2.2,c.1.6.1 104882,104883 3hurA 395 0.000203 1w8gA 234 0.002409 3cpgA 282 0.01752 3lhlA 287 1.195 1ct5A 256 6.127 c.1.6.2 28663 1j6pA 418 8.556 b.92.1.4,c.1.9.9 77089,77090 3chvA 284 11.73 1ur4A 399 11.78 c.1.8.3 113402 3bdwB 120 12.46 1y0pA 571 12.60 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 3cqjA 295 13.24 1igs 248 13.55 3bdwA 123 15.05 d.169.1.1 155161 1rlkA 117 15.31 c.131.1.1 97651 3kwsA 287 15.79 1thfD 253 16.44 c.1.2.1 28535 1wn2A 121 17.20 1k1eA 180 17.26 c.108.1.5 67995 1tv8A 340 18.14 c.1.28.3 107352 1qo8A 566 18.28 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1gqnA 252 19.14 c.1.10.1 90514 2zv3A 115 20.34 3e49A 311 20.91 2bpdA 142 21.35 3erjA 123 21.67 c.131.1.1 158193 3b5vA 248 22.19 1q7sA 117 22.52 c.131.1.1 96055 3ju2A 284 23.06 2bphA 140 24.43 1u69A 163 24.85 d.32.1.7 107699 1p1mA 406 25.78 b.92.1.4,c.1.9.9 87696,87697 1vbuA 328 25.99 c.1.8.3 119963 3e02A 311 26.64 1qumA 285 29.23 c.1.15.1 29393 2ztsA 251 32.09 1ypqA 135 32.52 d.169.1.1 123833 3ff7C 112 34.41 1b8gA 429 34.67 c.67.1.4 34499 1wohA 305 34.78 c.42.1.1 109446 2c6uA 122 36.27 1hjsA 332 36.56 c.1.8.3 83492 3gkfA 293 36.96 3glcA 295 37.74 3hupA 130 38.30 3bc7A 129 38.42 2wm8A 187 38.90 1w8rA 263 39.61 c.1.10.1 120734 2ywiA 196 40.48 1f76A 336 42.49 c.1.4.1 76160 3m0zA 249 43.48 1a53 247 43.72 1w8sA 263 44.06 c.1.10.1 120744 3kwpA 296 44.27 3krtA 456 44.28 1vliA 385 44.84 b.85.1.1,c.1.10.6 108830,108831 3ff9A 115 45.62 1whvA 100 46.96 d.58.7.1 114652 1zmaA 118 47.24 c.47.1.1 125354 3g8kA 130 48.29 1j8uA 325 49.71 d.178.1.1 71611 1ta3B 303 49.79 c.1.8.3 106732 1j96A 323 50.02 c.1.7.1 71616 1dmwA 307 50.95 d.178.1.1 42580 2r0bA 154 52.60 4pah 308 53.03 1bhgA 613 55.57 b.1.4.1,b.18.1.5,c.1.8.3 22161,23766,28889 1iloA 77 55.63 c.47.1.1 66205 3l0gA 300 55.71 1ne9A 335 56.46 d.108.1.4,d.108.1.4 91839,91840 1vc4A 254 56.58 c.1.2.4 100557 1afsA 323 57.25 c.1.7.1 28694 3e0lA 455 57.34 1j6oA 268 57.43 c.1.9.12 77088 1fg7A 356 57.53 c.67.1.1 59819 1xtyA 120 64.16 1pqwA 198 64.63 c.2.1.1 88278 1p2hA 571 65.04 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1a53A 247 65.83 c.1.2.4 28564 1hv8A 367 65.83 c.37.1.19,c.37.1.19 32405,32406 1li4A 432 66.24 c.2.1.4,c.23.12.3 84616,84617 2pjpA 121 67.12 3c8fA 245 70.09 2puzA 419 70.15 b.92.1.10,c.1.9.17 149873,149874 1rk6A 496 70.58 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 1e87A 118 71.05 d.169.1.1 42327 3i71A 68 72.70 1qtwA 285 72.98 c.1.15.1 29392 2ct8A 497 73.16 3hgjA 349 74.92 1kssA 571 75.31 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 3ifeA 434 76.30 1v0lA 313 77.46 c.1.8.3 108207 1yadA 221 78.02 2ac2A 309 78.28 2ez2A 456 79.62 2i9uA 439 80.17 b.92.1.4,c.1.9.9 147572,147573 3dx5A 286 80.61 1u6lA 149 80.67 d.32.1.7 113067 1mumA 295 81.62 c.1.12.7 85108 1n82A 331 85.57 c.1.8.3 91703 3lbkA 95 86.02 2e5vA 472 86.45 2aebA 322 87.57 c.42.1.1 126617 1ps9A 671 87.85 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 1vbgA 876 88.05 c.1.12.2,c.8.1.1,d.142.1.5 119951,119952,119953 1dgwX 79 89.66 b.82.1.2 28091 1eceA 358 89.67 c.1.8.3 28813 3inpA 246 89.96