# List of top-scoring protein chains for t2k-w0.5-1-o_sep-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hkvA 453 2.73e-45 b.49.2.3,c.1.6.1 83559,83560 1twiA 434 3.81e-45 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 4.20e-45 b.49.2.3,c.1.6.1 107335,107336 2o0tA 467 1.21e-44 2qghA 425 1.18e-43 2j66A 428 3.64e-43 2p3eA 420 1.26e-42 1knwA 425 1.55e-41 b.49.2.3,c.1.6.1 90969,90970 1d7kA 421 2.74e-41 b.49.2.3,c.1.6.1 26486,28648 2pljA 419 7.14e-41 2yxxA 386 2.19e-40 2nvaA 372 8.69e-40 7odcA 424 1.11e-38 b.49.2.3,c.1.6.1 26488,28650 1xfcA 384 3.66e-07 1vfsA 386 1.21e-06 b.49.2.2,c.1.6.1 108584,108585 3gwqA 426 1.29e-06 3e6eA 371 2.04e-06 3llxA 376 4.47e-06 2dy3A 361 1.03e-05 1bd0A 388 1.13e-05 b.49.2.2,c.1.6.1 26480,28642 3kw3A 376 2.61e-05 3co8A 380 8.97e-05 1rcqA 357 0.000564 b.49.2.2,c.1.6.1 104882,104883 3hurA 395 0.002282 1w8gA 234 0.007418 2vd8A 391 0.03647 3cpgA 282 0.05134 1ct5A 256 0.7295 c.1.6.2 28663 3lhlA 287 1.935 3kwsA 287 2.568 1wohA 305 6.499 c.42.1.1 109446 1vbuA 328 8.565 c.1.8.3 119963 1j6pA 418 10.71 b.92.1.4,c.1.9.9 77089,77090 1rlkA 117 11.90 c.131.1.1 97651 1n82A 331 12.38 c.1.8.3 91703 1whvA 100 14.58 d.58.7.1 114652 1wn2A 121 17.33 1ur4A 399 17.94 c.1.8.3 113402 1ta3B 303 20.19 c.1.8.3 106732 3ju2A 284 21.13 3cqjA 295 21.34 1igs 248 21.35 2zv3A 115 25.02 1v0lA 313 25.04 c.1.8.3 108207 1xtyA 120 26.68 1u69A 163 26.97 d.32.1.7 107699 3b5vA 248 27.67 1hjsA 332 27.88 c.1.8.3 83492 1ur1A 378 28.24 c.1.8.3 99804 2ct8A 497 29.13 1thfD 253 29.18 c.1.2.1 28535 1nq6A 302 32.00 c.1.8.3 92046 3bdwB 120 32.83 1p1mA 406 32.98 b.92.1.4,c.1.9.9 87696,87697 3erjA 123 37.79 c.131.1.1 158193 3dx5A 286 37.89 1i60A 278 38.10 c.1.15.4 71118 1qumA 285 39.39 c.1.15.1 29393 1q7sA 117 40.54 c.131.1.1 96055 1qo8A 566 47.40 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1eceA 358 49.62 c.1.8.3 28813 1r85A 379 51.27 c.1.8.3 104839 3chvA 284 51.95 1k1eA 180 53.52 c.108.1.5 67995 1y0pA 571 55.46 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2r47A 157 59.04 1xyzA 347 60.66 c.1.8.3 28804 1a53 247 61.50 2pjpA 121 64.63 1qtwA 285 65.89 c.1.15.1 29392 1xfkA 336 66.04 c.42.1.1 115264 1hv8A 367 70.78 c.37.1.19,c.37.1.19 32405,32406 1lvaA 258 71.02 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 3c4uA 307 72.75 3fm5A 150 73.00 2ac2A 309 76.03 3ff9A 115 76.50 1xyfA 436 76.51 b.42.2.1,c.1.8.3 25577,28909 2ztsA 251 77.15 1a53A 247 77.46 c.1.2.4 28564 2ef5A 290 79.69 2aebA 322 80.01 c.42.1.1 126617 2puzA 419 84.21 b.92.1.10,c.1.9.17 149873,149874 3a10A 116 85.50 2ac4A 309 86.84 3bdwA 123 87.47 d.169.1.1 155161