# List of top-scoring protein chains for t2k-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hkvA 453 2.17e-42 b.49.2.3,c.1.6.1 83559,83560 1tufA 434 3.07e-42 b.49.2.3,c.1.6.1 107335,107336 1twiA 434 3.16e-42 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 7.74e-42 2qghA 425 6.66e-41 2j66A 428 1.84e-40 2p3eA 420 7.81e-40 1knwA 425 7.97e-39 b.49.2.3,c.1.6.1 90969,90970 1d7kA 421 9.08e-39 b.49.2.3,c.1.6.1 26486,28648 2pljA 419 2.32e-38 2yxxA 386 6.66e-38 2nvaA 372 2.38e-37 7odcA 424 2.69e-36 b.49.2.3,c.1.6.1 26488,28650 1xfcA 384 7.85e-07 1vfsA 386 1.56e-06 b.49.2.2,c.1.6.1 108584,108585 3gwqA 426 2.05e-06 3e6eA 371 2.71e-06 3llxA 376 6.75e-06 2dy3A 361 1.24e-05 1bd0A 388 1.33e-05 b.49.2.2,c.1.6.1 26480,28642 3kw3A 376 2.53e-05 3co8A 380 9.10e-05 1rcqA 357 0.000533 b.49.2.2,c.1.6.1 104882,104883 3hurA 395 0.001885 1w8gA 234 0.004582 2vd8A 391 0.01140 3cpgA 282 0.05195 1ct5A 256 0.8028 c.1.6.2 28663 3lhlA 287 1.868 3kwsA 287 1.950 1wohA 305 6.708 c.42.1.1 109446 1vbuA 328 7.265 c.1.8.3 119963 1j6pA 418 8.057 b.92.1.4,c.1.9.9 77089,77090 3cqjA 295 8.600 3ju2A 284 14.58 1rlkA 117 14.88 c.131.1.1 97651 1n82A 331 15.03 c.1.8.3 91703 1ur4A 399 16.17 c.1.8.3 113402 1i60A 278 16.95 c.1.15.4 71118 1igs 248 19.60 1thfD 253 20.43 c.1.2.1 28535 1whvA 100 20.87 d.58.7.1 114652 3dx5A 286 22.13 1ta3B 303 25.00 c.1.8.3 106732 1p1mA 406 25.16 b.92.1.4,c.1.9.9 87696,87697 1v0lA 313 25.88 c.1.8.3 108207 1ur1A 378 26.80 c.1.8.3 99804 1wn2A 121 26.81 3b5vA 248 26.86 1hjsA 332 27.91 c.1.8.3 83492 2zv3A 115 28.70 1nq6A 302 29.04 c.1.8.3 92046 1xtyA 120 29.09 1u69A 163 34.24 d.32.1.7 107699 2r47A 157 35.25 1qumA 285 35.45 c.1.15.1 29393 1k1eA 180 39.80 c.108.1.5 67995 1q7sA 117 47.05 c.131.1.1 96055 3bdwB 120 50.56 2ztsA 251 50.83 1qo8A 566 51.30 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 3erjA 123 53.40 c.131.1.1 158193 1r85A 379 53.81 c.1.8.3 104839 1hv8A 367 54.28 c.37.1.19,c.37.1.19 32405,32406 2ac2A 309 54.34 1y0pA 571 55.16 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 3c4uA 307 56.68 1eceA 358 56.73 c.1.8.3 28813 3a10A 116 56.76 3chvA 284 59.32 2ef5A 290 60.25 1tv8A 340 61.35 c.1.28.3 107352 2ac4A 309 61.37 2aebA 322 61.64 c.42.1.1 126617 1w8sA 263 61.99 c.1.10.1 120744 1qtwA 285 63.65 c.1.15.1 29392 1xyzA 347 64.12 c.1.8.3 28804 3g8rA 350 64.34 1a53 247 65.19 1u7pA 164 65.99 c.108.1.17 113095 2ct8A 497 66.83 1vc4A 254 67.84 c.1.2.4 100557 3fm5A 150 77.25 1a53A 247 81.08 c.1.2.4 28564 2puzA 419 85.25 b.92.1.10,c.1.9.17 149873,149874 1q0qA 406 85.47 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 1yl5A 247 85.55 c.2.1.3,d.81.1.3 123617,123618 1rkqA 282 86.38 c.108.1.10 97621 1vbgA 876 87.76 c.1.12.2,c.8.1.1,d.142.1.5 119951,119952,119953 1j6oA 268 87.98 c.1.9.12 77088 1ho1A 242 88.00 c.1.24.1 61097 2nlyA 245 88.24 c.6.2.7 138364 3ff9A 115 88.66