# List of top-scoring protein chains for t2k-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1hkvA 453 4.65e-43 b.49.2.3,c.1.6.1 83559,83560 1tufA 434 7.49e-43 b.49.2.3,c.1.6.1 107335,107336 1twiA 434 8.10e-43 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 1.50e-42 2qghA 425 1.04e-41 2j66A 428 3.28e-41 2p3eA 420 1.62e-40 1knwA 425 1.59e-39 b.49.2.3,c.1.6.1 90969,90970 1d7kA 421 2.12e-39 b.49.2.3,c.1.6.1 26486,28648 2pljA 419 5.02e-39 2yxxA 386 1.76e-38 2nvaA 372 5.03e-38 7odcA 424 5.47e-37 b.49.2.3,c.1.6.1 26488,28650 1xfcA 384 6.57e-07 1vfsA 386 1.31e-06 b.49.2.2,c.1.6.1 108584,108585 3gwqA 426 2.09e-06 3e6eA 371 2.46e-06 3llxA 376 8.11e-06 2dy3A 361 1.26e-05 1bd0A 388 1.51e-05 b.49.2.2,c.1.6.1 26480,28642 3kw3A 376 3.52e-05 3co8A 380 8.60e-05 1rcqA 357 0.000571 b.49.2.2,c.1.6.1 104882,104883 3hurA 395 0.001510 1w8gA 234 0.007067 2vd8A 391 0.01821 3cpgA 282 0.04398 1ct5A 256 0.7414 c.1.6.2 28663 3lhlA 287 1.353 3kwsA 287 2.017 1wohA 305 4.785 c.42.1.1 109446 1vbuA 328 7.439 c.1.8.3 119963 1j6pA 418 8.311 b.92.1.4,c.1.9.9 77089,77090 3cqjA 295 9.95 1n82A 331 10.81 c.1.8.3 91703 3ju2A 284 14.76 1rlkA 117 14.76 c.131.1.1 97651 1whvA 100 14.80 d.58.7.1 114652 1p1mA 406 19.86 b.92.1.4,c.1.9.9 87696,87697 1igs 248 20.02 1ur4A 399 22.37 c.1.8.3 113402 1i60A 278 23.53 c.1.15.4 71118 3dx5A 286 24.80 1ur1A 378 25.08 c.1.8.3 99804 3b5vA 248 25.30 1v0lA 313 26.29 c.1.8.3 108207 1ta3B 303 26.50 c.1.8.3 106732 1wn2A 121 27.53 1hjsA 332 28.32 c.1.8.3 83492 2r47A 157 29.02 1nq6A 302 29.15 c.1.8.3 92046 1k1eA 180 30.28 c.108.1.5 67995 1u69A 163 30.30 d.32.1.7 107699 2zv3A 115 37.76 1thfD 253 38.76 c.1.2.1 28535 1xtyA 120 39.15 1qumA 285 43.08 c.1.15.1 29393 2ct8A 497 44.77 1r85A 379 49.07 c.1.8.3 104839 1xyzA 347 50.25 c.1.8.3 28804 1eceA 358 52.32 c.1.8.3 28813 2ef5A 290 52.89 2ac2A 309 55.78 1q7sA 117 57.84 c.131.1.1 96055 1hv8A 367 58.95 c.37.1.19,c.37.1.19 32405,32406 3erjA 123 59.07 c.131.1.1 158193 3a10A 116 60.18 2ac4A 309 62.40 1xfkA 336 65.58 c.42.1.1 115264 3c4uA 307 67.12 1a53 247 67.51 2aebA 322 67.88 c.42.1.1 126617 1qtwA 285 68.28 c.1.15.1 29392 1u7pA 164 68.82 c.108.1.17 113095 3bdwB 120 70.13 2ztsA 251 72.88 1w8sA 263 73.22 c.1.10.1 120744 3chvA 284 74.03 3i42A 127 76.03 1y0pA 571 76.96 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1a53A 247 77.34 c.1.2.4 28564 2pjpA 121 77.38 2cevA 299 77.75 c.42.1.1 32576 2nlyA 245 78.32 c.6.2.7 138364 1qo8A 566 79.76 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1tv8A 340 82.08 c.1.28.3 107352 1dozA 309 82.38 c.92.1.1 35592 3fm5A 150 84.02 3ff9A 115 86.75 1vc4A 254 88.28 c.1.2.4 100557 1gqnA 252 89.33 c.1.10.1 90514