# List of top-scoring protein chains for t2k-w0.5-1-near-backbone-11-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 1.33e-44 b.49.2.3,c.1.6.1 107399,107400 1hkvA 453 1.35e-44 b.49.2.3,c.1.6.1 83559,83560 1tufA 434 1.54e-44 b.49.2.3,c.1.6.1 107335,107336 2o0tA 467 1.96e-43 2qghA 425 2.56e-43 2p3eA 420 3.05e-42 2j66A 428 6.60e-42 1d7kA 421 9.56e-41 b.49.2.3,c.1.6.1 26486,28648 1knwA 425 1.70e-40 b.49.2.3,c.1.6.1 90969,90970 2yxxA 386 4.92e-40 2pljA 419 7.18e-40 2nvaA 372 1.55e-39 7odcA 424 6.62e-38 b.49.2.3,c.1.6.1 26488,28650 1xfcA 384 1.03e-07 1vfsA 386 1.36e-07 b.49.2.2,c.1.6.1 108584,108585 1bd0A 388 3.19e-07 b.49.2.2,c.1.6.1 26480,28642 2dy3A 361 4.19e-07 3e6eA 371 1.10e-06 3gwqA 426 1.24e-06 3llxA 376 1.49e-06 3kw3A 376 1.49e-06 1rcqA 357 3.49e-05 b.49.2.2,c.1.6.1 104882,104883 3co8A 380 4.84e-05 1w8gA 234 0.000110 2vd8A 391 0.000158 3cpgA 282 0.000529 3hurA 395 0.008275 1f76A 336 3.355 c.1.4.1 76160 1ur4A 399 4.794 c.1.8.3 113402 1ct5A 256 6.375 c.1.6.2 28663 1gqnA 252 6.490 c.1.10.1 90514 2ef5A 290 6.815 1j6pA 418 8.493 b.92.1.4,c.1.9.9 77089,77090 1vbuA 328 10.43 c.1.8.3 119963 1vi9A 299 11.68 c.72.1.5 100750 3bdwB 120 13.30 3ju2A 284 13.64 1ta3B 303 13.84 c.1.8.3 106732 3kwsA 287 13.91 1whvA 100 18.74 d.58.7.1 114652 2b0mA 393 20.17 c.1.4.1 127644 3bc7A 129 20.38 3lhlA 287 21.67 1xi3A 215 21.77 c.1.3.1 109601 2c6uA 122 22.08 1v0lA 313 23.29 c.1.8.3 108207 1rlkA 117 23.53 c.131.1.1 97651 1u69A 163 24.16 d.32.1.7 107699 2wm8A 187 24.35 1vliA 385 24.93 b.85.1.1,c.1.10.6 108830,108831 2r47A 157 24.98 1hjsA 332 25.50 c.1.8.3 83492 2bpdA 142 25.51 1qumA 285 26.36 c.1.15.1 29393 2bphA 140 28.26 3m0zA 249 29.05 1p1mA 406 30.07 b.92.1.4,c.1.9.9 87696,87697 1ur1A 378 30.17 c.1.8.3 99804 2ftpA 302 31.54 1m5wA 243 32.79 c.1.24.1 84836 3hnoA 419 34.08 3ff7C 112 34.39 2zv3A 115 35.01 1yadA 221 35.20 2hi4A 495 35.46 3g8kA 130 36.51 1odoA 408 36.54 a.104.1.1 92783 1fobA 334 36.97 c.1.8.3 83255 1nq6A 302 37.05 c.1.8.3 92046 2o55A 258 37.50 1qtwA 285 38.02 c.1.15.1 29392 1pe1A 267 38.32 c.1.10.4 94591 2h1vA 310 39.79 1vc4A 254 39.79 c.1.2.4 100557 3erjA 123 41.57 c.131.1.1 158193 1qo3C 137 43.24 d.169.1.1 42350 1li4A 432 43.44 c.2.1.4,c.23.12.3 84616,84617 3gipA 480 44.71 1r85A 379 46.43 c.1.8.3 104839 1xtyA 120 46.51 3fdqA 170 46.89 1wn2A 121 47.46 3gs6A 340 47.84 3ff9A 115 48.62 3l0gA 300 48.67 3m6yA 275 48.79 3bdwA 123 50.39 d.169.1.1 155161 1jv1A 505 50.94 c.68.1.5 71892 1xyfA 436 50.99 b.42.2.1,c.1.8.3 25577,28909 1u7iA 136 51.34 d.32.1.7 107724 1n82A 331 51.60 c.1.8.3 91703 3hgjA 349 52.07 2wflA 264 54.37 1ypqA 135 54.89 d.169.1.1 123833 1ho1A 242 56.18 c.1.24.1 61097 1igs 248 56.54 1vs1A 276 59.47 3fypA 280 60.31 3i42A 127 60.48 3goqA 310 61.83 1q7sA 117 62.55 c.131.1.1 96055 2pjpA 121 63.10 1ps9A 671 64.68 c.1.4.1,c.3.1.1,c.4.1.1 95076,95077,95078 2vxzA 165 64.93 2o70A 174 67.91 a.288.1.1 148645 1rk6A 496 68.95 b.92.1.6,b.92.1.6,c.1.9.11 97599,97600,97601 3gzjA 258 70.07 1f1uA 323 70.33 d.32.1.3,d.32.1.3 83200,83201 1qpoA 284 71.93 c.1.17.1,d.41.2.1 29561,38597 3cqjA 295 74.29 1wohA 305 78.46 c.42.1.1 109446 3gr7A 340 81.44 1j6oA 268 83.29 c.1.9.12 77088 1xp3A 307 83.29 c.1.15.1 122210 3kvlA 390 84.28 1afsA 323 85.41 c.1.7.1 28694 3krtA 456 85.97 3fm5A 150 86.79 1hv8A 367 87.12 c.37.1.19,c.37.1.19 32405,32406 3fyoA 280 88.61 1a53 247 89.17