# List of top-scoring protein chains for t2k-w0.5-1-n_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 6.49e-39 b.49.2.3,c.1.6.1 107399,107400 1hkvA 453 8.05e-39 b.49.2.3,c.1.6.1 83559,83560 1tufA 434 1.79e-38 b.49.2.3,c.1.6.1 107335,107336 2o0tA 467 2.05e-38 2qghA 425 2.50e-37 2j66A 428 1.69e-36 2p3eA 420 3.35e-36 1knwA 425 1.54e-35 b.49.2.3,c.1.6.1 90969,90970 2yxxA 386 5.45e-35 1d7kA 421 5.89e-35 b.49.2.3,c.1.6.1 26486,28648 2pljA 419 9.23e-35 2nvaA 372 1.39e-34 7odcA 424 1.61e-33 b.49.2.3,c.1.6.1 26488,28650 3llxA 376 1.42e-06 1xfcA 384 2.67e-06 1vfsA 386 7.63e-06 b.49.2.2,c.1.6.1 108584,108585 1bd0A 388 1.07e-05 b.49.2.2,c.1.6.1 26480,28642 3kw3A 376 2.82e-05 3gwqA 426 3.64e-05 2dy3A 361 4.48e-05 3e6eA 371 4.49e-05 3hurA 395 0.001403 1rcqA 357 0.002787 b.49.2.2,c.1.6.1 104882,104883 3co8A 380 0.004556 1w8gA 234 0.01968 3cpgA 282 0.03989 2vd8A 391 0.08799 1hjsA 332 0.2919 c.1.8.3 83492 1j6pA 418 2.931 b.92.1.4,c.1.9.9 77089,77090 1qo8A 566 3.623 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 1vbuA 328 3.660 c.1.8.3 119963 1hkbA 917 3.810 c.55.1.3,c.55.1.3,c.55.1.3,c.55.1.3 33479,33480,33481,33482 1n82A 331 4.023 c.1.8.3 91703 1ur4A 399 4.362 c.1.8.3 113402 1ct5A 256 4.826 c.1.6.2 28663 3lhlA 287 6.076 1clqA 903 6.583 c.55.3.5,e.8.1.1 33717,43006 3dx5A 286 6.763 3d6kA 422 7.861 3kwsA 287 8.039 2puzA 419 9.171 b.92.1.10,c.1.9.17 149873,149874 1d5tA 433 9.208 c.3.1.3,d.16.1.6 30422,37986 1dtyA 429 9.403 c.67.1.4 34495 2i9uA 439 9.558 b.92.1.4,c.1.9.9 147572,147573 1wohA 305 9.848 c.42.1.1 109446 1zd3A 555 10.26 c.108.1.2,c.69.1.11 124930,124931 3maxA 367 10.30 1p1mA 406 10.51 b.92.1.4,c.1.9.9 87696,87697 1y0pA 571 10.86 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2or4A 709 11.07 a.48.2.1,c.8.4.1,c.56.5.5 139258,139259,139260 1i60A 278 11.08 c.1.15.4 71118 1fobA 334 11.36 c.1.8.3 83255 1qumA 285 11.37 c.1.15.1 29393 2i57A 438 11.51 3d2mA 456 13.95 1gqnA 252 14.52 c.1.10.1 90514 1e15A 499 14.66 b.72.2.1,c.1.8.5,d.26.3.1 27810,29006,38440 4ubpC 570 15.72 b.92.1.1,c.1.9.2 28431,29053 2ef5A 290 16.14 3itvA 438 16.44 3ktxA 499 17.15 1xfkA 336 18.29 c.42.1.1 115264 1gplA 432 19.24 b.12.1.2,c.69.1.19 23645,34793 2bs3A 656 19.47 a.7.3.1,c.3.1.4,d.168.1.1 129042,129043,129044 2j6lA 500 19.78 1q7zA 566 19.83 c.1.21.2,c.1.26.1 96090,96091 3cqjA 295 19.90 2g50A 530 20.23 b.58.1.1,c.1.12.1,c.49.1.1 134618,134619,134620 2c0hA 353 20.47 c.1.8.3 129594 1gpl 432 20.51 1xyfA 436 21.74 b.42.2.1,c.1.8.3 25577,28909 1e6pA 499 22.32 b.72.2.1,c.1.8.5,d.26.3.1 59314,59315,59316 1u94A 356 22.83 c.37.1.11,d.48.1.1 107743,107744 2h9aA 445 24.80 1jvsA 400 24.80 a.69.3.1,c.2.1.3,d.81.1.3 77187,77188,77189 1id1A 153 26.09 c.2.1.9 62286 1eceA 358 26.15 c.1.8.3 28813 1m5wA 243 26.66 c.1.24.1 84836 1mo9A 523 26.69 c.3.1.5,c.3.1.5,d.87.1.1 79341,79342,79343 1hkkA 364 26.89 c.1.8.5,d.26.3.1 90634,90635 2hk0A 309 27.31 1yl5A 247 27.95 c.2.1.3,d.81.1.3 123617,123618 1a53 247 29.09 1rlrA 761 29.57 a.98.1.1,c.7.1.2 18753,30679 1ejxC 567 30.45 b.92.1.1,c.1.9.2 83184,83185 3cp8A 641 31.34 1gpuA 680 31.86 c.36.1.10,c.36.1.6,c.48.1.1 65454,65455,65456 1uhvA 500 32.08 b.71.1.2,c.1.8.3 99402,99403 1igs 248 33.04 2bhuA 602 34.06 b.1.18.2,b.71.1.1,c.1.8.1 128554,128555,128556 1u1jA 765 34.15 c.1.22.2,c.1.22.2 107590,107591 2af4C 333 34.57 c.77.1.5 126656 1d9eA 284 34.64 c.1.10.4 29195 3fo5A 258 35.65 2d1zA 436 35.76 3a9iA 376 35.96 3hqnA 499 37.40 1q9rB 222 37.70 b.1.1.1,b.1.1.2 96307,96308 2e8yA 718 39.13 2dh2A 424 40.16 3i42A 127 40.38 2g47A 990 40.84 1j96A 323 41.11 c.1.7.1 71616 1qtwA 285 41.49 c.1.15.1 29392 1dn1A 594 41.84 e.25.1.1 43357 1el5A 389 41.87 c.3.1.2,d.16.1.3 30369,37937 1ez1A 392 42.15 b.84.2.1,c.30.1.1,d.142.1.2 28248,31655,41500 1tv8A 340 42.92 c.1.28.3 107352 1n2sA 299 44.23 c.2.1.2 79857 3guvA 167 44.48 1gnd 447 44.91 1ta3B 303 45.93 c.1.8.3 106732 1eyzA 392 46.23 b.84.2.1,c.30.1.1,d.142.1.2 28246,31653,41498 2olnA 397 46.82 3lnpA 468 47.33 1ohfA 644 47.81 b.121.4.8 93014 1yaaA 412 48.09 c.67.1.1 34280 2e5vA 472 48.67 1jqgA 433 49.27 c.56.5.1,d.58.3.1 71791,71792 2hzbA 333 49.27 c.143.1.1 136911 2wcxA 537 50.82 1k77A 260 51.06 c.1.15.5 72096 1whvA 100 51.31 d.58.7.1 114652 3figA 646 51.97 2adbA 148 52.32 d.58.7.1 126581 1a5kC 566 54.54 b.92.1.1,c.1.9.2 28425,29047 1vm6A 228 55.05 d.81.1.3,c.2.1.3 108877,118631 1edgA 380 56.46 c.1.8.3 28807 1k6wA 426 57.00 b.92.1.2,c.1.9.5 68236,68237 2hhjA 267 57.20 c.60.1.1 136497 3hemA 302 57.62 1ur1A 378 59.52 c.1.8.3 99804 2e7fA 262 61.37 1sflA 238 61.42 c.1.10.1 112077 2wm8A 187 61.62 1ew2A 513 63.08 c.76.1.1 59525 1rlkA 117 63.09 c.131.1.1 97651 3h4kA 598 64.64 1g8oA 310 64.65 c.68.1.9 60375 2qmjA 870 64.98 2whjA 308 68.55 1c7sA 858 69.62 b.1.18.2,b.2.2.3,c.1.8.6,d.92.2.1 21812,22408,29011,40410 8fabB 224 70.52 b.1.1.1,b.1.1.2 19773,20883 3czpA 500 71.88 1fiy 883 72.45 1nq6A 302 72.80 c.1.8.3 92046 1h7xA 1025 73.68 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 15687,28632,30328,30613,39011 1wzlA 585 73.76 b.1.18.2,b.71.1.1,c.1.8.1 121513,121514,121515 1q0qA 406 73.90 a.69.3.1,c.2.1.3,d.81.1.3 104464,104465,104466 2ze0A 555 75.03 1w8rA 263 76.08 c.1.10.1 120734 3gu2A 336 76.18 2aeeA 211 77.69 c.61.1.1 126620 2iutA 574 77.85 2wklA 497 78.20 2vhxA 377 78.69 2qaeA 468 78.74 1vzwA 244 78.87 c.1.2.1 120553 1d3vA 323 79.82 c.42.1.1 32559 2reb 352 80.26 2pgfA 371 80.37 1b1yA 500 80.72 c.1.8.1 28796 2vjxA 846 81.20 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153203,153204,153205,153206,153207 2rb7A 364 81.56 1j0dA 341 81.57 c.79.1.1 83902 1ua7A 422 82.13 b.71.1.1,c.1.8.1 107759,107760 1eu1A 780 83.12 b.52.2.2,c.81.1.1 26903,35311 3b5vA 248 85.05 1s1pA 331 86.02 c.1.7.1 98350 1thfD 253 86.07 c.1.2.1 28535 1k1eA 180 86.86 c.108.1.5 67995 3lteA 132 88.24 2wyhA 923 88.48