# List of top-scoring protein chains for t2k-w0.5-1-alpha-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1hkvA	453	2.45e-48	b.49.2.3,c.1.6.1	83559,83560
1tufA	434	3.71e-48	b.49.2.3,c.1.6.1	107335,107336
1twiA	434	3.91e-48	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	5.28e-48		
2qghA	425	1.26e-46		
2j66A	428	4.35e-46		
2p3eA	420	1.66e-45		
1knwA	425	2.52e-44	b.49.2.3,c.1.6.1	90969,90970
1d7kA	421	3.57e-44	b.49.2.3,c.1.6.1	26486,28648
2pljA	419	5.14e-44		
2yxxA	386	1.21e-43		
2nvaA	372	8.61e-43		
7odcA	424	1.50e-41	b.49.2.3,c.1.6.1	26488,28650
1xfcA	384	1.27e-07		
1vfsA	386	1.56e-07	b.49.2.2,c.1.6.1	108584,108585
3e6eA	371	1.49e-06		
3llxA	376	1.52e-06		
3gwqA	426	1.70e-06		
2dy3A	361	2.50e-06		
1bd0A	388	5.87e-06	b.49.2.2,c.1.6.1	26480,28642
3kw3A	376	8.16e-06		
3co8A	380	1.96e-05		
2vd8A	391	8.24e-05		
1rcqA	357	0.000326	b.49.2.2,c.1.6.1	104882,104883
3hurA	395	0.000457		
1w8gA	234	0.006296		
3cpgA	282	0.03227		
3lhlA	287	3.765		
1whvA	100	3.948	d.58.7.1	114652
1ct5A	256	4.055	c.1.6.2	28663
1vbuA	328	7.064	c.1.8.3	119963
1j6pA	418	8.026	b.92.1.4,c.1.9.9	77089,77090
3kwsA	287	8.928		
1igs	248	12.71		
1ur4A	399	14.81	c.1.8.3	113402
1ta3B	303	15.33	c.1.8.3	106732
1rlkA	117	15.51	c.131.1.1	97651
1n82A	331	18.14	c.1.8.3	91703
3bdwB	120	18.77		
1wohA	305	19.02	c.42.1.1	109446
1v0lA	313	19.61	c.1.8.3	108207
1wn2A	121	20.11		
3b5vA	248	23.11		
1nq6A	302	23.95	c.1.8.3	92046
1gqnA	252	25.78	c.1.10.1	90514
1u69A	163	26.00	d.32.1.7	107699
2zv3A	115	26.05		
1p1mA	406	27.30	b.92.1.4,c.1.9.9	87696,87697
1hjsA	332	29.66	c.1.8.3	83492
2bpdA	142	29.99		
2ct8A	497	30.07		
1y0pA	571	31.63	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
3erjA	123	36.25	c.131.1.1	158193
1thfD	253	37.15	c.1.2.1	28535
3ff9A	115	41.23		
2bphA	140	43.35		
3bdwA	123	43.47	d.169.1.1	155161
1xtyA	120	44.19		
1hv8A	367	44.33	c.37.1.19,c.37.1.19	32405,32406
1q7sA	117	44.72	c.131.1.1	96055
1a53	247	48.19		
3ff7C	112	50.17		
3g8kA	130	50.82		
1ur1A	378	55.20	c.1.8.3	99804
1k1eA	180	58.52	c.108.1.5	67995
1xyzA	347	61.89	c.1.8.3	28804
1i60A	278	62.56	c.1.15.4	71118
2adbA	148	62.80	d.58.7.1	126581
1bhgA	613	63.06	b.1.4.1,b.18.1.5,c.1.8.3	22161,23766,28889
2pjpA	121	64.63		
1qumA	285	65.78	c.1.15.1	29393
2c6uA	122	66.01		
1qo8A	566	66.16	a.138.1.3,c.3.1.4,d.168.1.1	19696,30433,42316
1xyfA	436	68.48	b.42.2.1,c.1.8.3	25577,28909
1r85A	379	70.68	c.1.8.3	104839
2ac2A	309	70.74		
3hupA	130	75.16		
3ju2A	284	81.48		
1a53A	247	81.95	c.1.2.4	28564
1odzA	386	82.49	c.1.8.3	86889
1iloA	77	82.96	c.47.1.1	66205
2ac4A	309	83.80		
3bc7A	129	85.39		
3e49A	311	86.03		
3cqjA	295	88.61