# List of top-scoring protein chains for t2k-w0.5-1-CB_burial_14_7-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1tufA 434 1.62e-44 b.49.2.3,c.1.6.1 107335,107336 1twiA 434 1.66e-44 b.49.2.3,c.1.6.1 107399,107400 1hkvA 453 5.81e-44 b.49.2.3,c.1.6.1 83559,83560 2o0tA 467 5.81e-43 2qghA 425 7.02e-43 2j66A 428 7.75e-42 2p3eA 420 3.31e-41 1knwA 425 2.07e-40 b.49.2.3,c.1.6.1 90969,90970 1d7kA 421 6.27e-40 b.49.2.3,c.1.6.1 26486,28648 2yxxA 386 2.46e-39 2pljA 419 2.48e-39 2nvaA 372 1.46e-38 7odcA 424 3.97e-37 b.49.2.3,c.1.6.1 26488,28650 3llxA 376 7.52e-07 3gwqA 426 1.53e-06 1xfcA 384 1.54e-06 1vfsA 386 2.44e-06 b.49.2.2,c.1.6.1 108584,108585 3e6eA 371 2.88e-06 2dy3A 361 4.88e-06 1bd0A 388 1.05e-05 b.49.2.2,c.1.6.1 26480,28642 3kw3A 376 3.17e-05 3co8A 380 9.46e-05 1rcqA 357 0.000248 b.49.2.2,c.1.6.1 104882,104883 1w8gA 234 0.003035 2vd8A 391 0.003970 3cpgA 282 0.01321 3hurA 395 0.05447 1ct5A 256 1.207 c.1.6.2 28663 3lhlA 287 2.785 1ur4A 399 5.255 c.1.8.3 113402 1whvA 100 9.621 d.58.7.1 114652 2wflA 264 12.13 1hjsA 332 15.88 c.1.8.3 83492 1ta3B 303 16.31 c.1.8.3 106732 1v0lA 313 17.73 c.1.8.3 108207 3gzjA 258 17.74 2ac2A 309 18.49 1xklA 273 18.76 c.69.1.20 115410 3bc7A 129 19.76 2h1vA 310 20.57 1vbuA 328 20.67 c.1.8.3 119963 3gnxA 387 24.69 2ac4A 309 26.82 1thfD 253 28.51 c.1.2.1 28535 1fobA 334 33.22 c.1.8.3 83255 1amoA 615 33.36 b.43.4.1,c.23.5.2,c.25.1.4 25669,31210,31557 1a0dA 440 34.55 c.1.15.3 29533 2ef5A 290 36.21 3id6C 232 38.90 1n82A 331 39.04 c.1.8.3 91703 1a8uA 277 39.33 c.69.1.12 34703 1byb 495 40.35 1nq6A 302 40.83 c.1.8.3 92046 1wohA 305 41.59 c.42.1.1 109446 1eceA 358 41.75 c.1.8.3 28813 2bphA 140 42.04 1v3hA 495 42.47 c.1.8.1 108303 1odzA 386 42.55 c.1.8.3 86889 1f76A 336 42.60 c.1.4.1 76160 2bpdA 142 43.72 3c70A 257 45.20 c.69.1.20 155996 3dqzA 258 46.31 1w32A 348 47.49 c.1.8.3 114120 2vifA 141 48.04 1b1yA 500 48.11 c.1.8.1 28796 1r85A 379 48.39 c.1.8.3 104839 1ur1A 378 50.57 c.1.8.3 99804 3goqA 310 52.95 2ocgA 254 55.04 1j6pA 418 59.59 b.92.1.4,c.1.9.9 77089,77090 3feqA 423 62.90 1xfkA 336 63.49 c.42.1.1 115264 3bp8A 406 65.42 a.4.5.63,c.55.1.10,c.55.1.10 155463,155464,155465 1xyfA 436 65.64 b.42.2.1,c.1.8.3 25577,28909 1broA 277 66.00 c.69.1.12 34700 2b0mA 393 67.65 c.1.4.1 127644 1brt 277 71.10 1p1mA 406 71.98 b.92.1.4,c.1.9.9 87696,87697 2r47A 157 74.40 1dozA 309 74.53 c.92.1.1 35592 1hkhA 279 77.38 c.69.1.12 90628 3bdwA 123 80.25 d.169.1.1 155161 1vh7A 265 80.61 c.1.2.1 100646 2ioyA 283 81.14 1kg0C 136 81.17 d.169.1.1 72445 1jubA 311 86.45 c.1.4.1 90908 1tr9A 341 87.48 c.1.8.7 112617 2c6uA 122 87.50 3b5eA 223 88.00 c.69.1.14 154836