# List of top-scoring protein chains for t2k-w0.5-1-CB8-sep9-0.3-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 1.80e-41 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 2.49e-41 b.49.2.3,c.1.6.1 107335,107336 1hkvA 453 3.79e-41 b.49.2.3,c.1.6.1 83559,83560 2qghA 425 2.24e-40 2o0tA 467 2.56e-40 2j66A 428 3.11e-39 2p3eA 420 1.21e-38 1d7kA 421 4.63e-38 b.49.2.3,c.1.6.1 26486,28648 1knwA 425 1.30e-37 b.49.2.3,c.1.6.1 90969,90970 2yxxA 386 2.58e-37 2pljA 419 4.23e-37 2nvaA 372 2.28e-36 7odcA 424 5.37e-35 b.49.2.3,c.1.6.1 26488,28650 1vfsA 386 5.84e-07 b.49.2.2,c.1.6.1 108584,108585 3e6eA 371 1.23e-06 1xfcA 384 1.73e-06 3gwqA 426 4.06e-06 1bd0A 388 7.13e-06 b.49.2.2,c.1.6.1 26480,28642 3llxA 376 1.01e-05 3kw3A 376 1.06e-05 2dy3A 361 1.36e-05 1rcqA 357 8.14e-05 b.49.2.2,c.1.6.1 104882,104883 3co8A 380 8.99e-05 2vd8A 391 0.000251 1w8gA 234 0.000780 3hurA 395 0.002187 3cpgA 282 0.01102 1ur4A 399 0.7383 c.1.8.3 113402 1ct5A 256 2.137 c.1.6.2 28663 1vbuA 328 8.189 c.1.8.3 119963 2ef5A 290 8.430 3ju2A 284 9.920 1hdiA 413 12.17 c.86.1.1 60964 1xfkA 336 13.93 c.42.1.1 115264 1j6pA 418 14.32 b.92.1.4,c.1.9.9 77089,77090 2wzbA 416 14.75 1v0lA 313 17.60 c.1.8.3 108207 3c3bA 420 17.69 2aebA 322 19.55 c.42.1.1 126617 1ta3B 303 20.18 c.1.8.3 106732 1p1mA 406 20.46 b.92.1.4,c.1.9.9 87696,87697 1hjsA 332 21.61 c.1.8.3 83492 1hv8A 367 24.14 c.37.1.19,c.37.1.19 32405,32406 2cevA 299 25.89 c.42.1.1 32576 1n82A 331 26.99 c.1.8.3 91703 1w32A 348 27.55 c.1.8.3 114120 1thfD 253 27.76 c.1.2.1 28535 1xi3A 215 29.49 c.1.3.1 109601 3i42A 127 29.57 3gipA 480 30.78 1eceA 358 31.02 c.1.8.3 28813 3kwsA 287 31.09 1nq6A 302 31.75 c.1.8.3 92046 3lhlA 287 32.78 1rlkA 117 34.15 c.131.1.1 97651 1xyfA 436 34.84 b.42.2.1,c.1.8.3 25577,28909 1f76A 336 35.50 c.1.4.1 76160 3kvlA 390 37.63 3m1rA 322 38.54 2wm8A 187 39.97 3hnoA 419 42.81 1bs0A 384 43.61 c.67.1.4 34490 1lbqA 362 43.75 c.92.1.1 77877 1ur1A 378 46.10 c.1.8.3 99804 1xklA 273 49.13 c.69.1.20 115410 1r85A 379 50.85 c.1.8.3 104839 3xis 387 50.96 2wflA 264 50.99 1j9yA 385 52.06 c.1.8.3 62791 1qumA 285 53.30 c.1.15.1 29393 1whvA 100 53.53 d.58.7.1 114652 3gnxA 387 54.64 1clxA 347 54.75 c.1.8.3 28899 4xis 387 55.10 3cqjA 295 55.14 1vm7A 311 58.24 c.72.1.1 108884 2d1zA 436 58.69 1odzA 386 60.57 c.1.8.3 86889 1fobA 334 61.50 c.1.8.3 83255 1phpA 394 62.90 c.86.1.1 35452 1wbhA 214 63.29 c.1.10.1 120845 1dozA 309 63.54 c.92.1.1 35592 2ac2A 309 63.98 3gkfA 293 64.48 4xiaA 393 66.21 c.1.15.3 29439 1y0pA 571 68.11 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1m5wA 243 69.12 c.1.24.1 84836 2oktA 342 70.58 1qo8A 566 71.77 a.138.1.3,c.3.1.4,d.168.1.1 19696,30433,42316 2r0bA 154 73.07 1b8gA 429 73.41 c.67.1.4 34499 1fh9A 312 73.66 c.1.8.3 28913 1v6sA 390 76.70 c.86.1.1 100424 3gzjA 258 77.18 2bpdA 142 77.35 2tmdA 729 77.58 c.1.4.1,c.3.1.1,c.4.1.1 28616,30317,30602 3lteA 132 77.85 3kp1A 763 78.14 2zv3A 115 79.33 2ac4A 309 79.73 1gq6A 313 81.25 c.42.1.1 70341 3g8kA 130 81.68 1d3vA 323 82.66 c.42.1.1 32559 2o55A 258 83.75 3hgjA 349 83.88 2bphA 140 84.02 1wohA 305 84.29 c.42.1.1 109446 3a1nA 317 85.06 3gjzA 336 86.02 1r30A 369 86.54 c.1.28.1 96895 3erjA 123 88.30 c.131.1.1 158193 1xtyA 120 88.88 3gnhA 403 88.96 1m7yA 435 89.13 c.67.1.4 78761 3bdwB 120 89.13