# List of top-scoring protein chains for t2k-80-60-80-str2+near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2qghA 425 4.66e-21 1twiA 434 1.41e-20 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 2.09e-20 b.49.2.3,c.1.6.1 107335,107336 2j66A 428 6.31e-20 2p3eA 420 8.07e-20 1hkvA 453 1.10e-19 b.49.2.3,c.1.6.1 83559,83560 2o0tA 467 1.84e-19 2nvaA 372 3.16e-19 2pljA 419 3.37e-18 1d7kA 421 3.96e-18 b.49.2.3,c.1.6.1 26486,28648 2yxxA 386 5.20e-18 1knwA 425 6.25e-18 b.49.2.3,c.1.6.1 90969,90970 7odcA 424 9.24e-18 b.49.2.3,c.1.6.1 26488,28650 1bd0A 388 8.85e-05 b.49.2.2,c.1.6.1 26480,28642 3e6eA 371 0.000142 3gwqA 426 0.000230 1vfsA 386 0.000245 b.49.2.2,c.1.6.1 108584,108585 2vd8A 391 0.000700 2dy3A 361 0.000842 1xfcA 384 0.001196 1rcqA 357 0.001536 b.49.2.2,c.1.6.1 104882,104883 3co8A 380 0.003000 3llxA 376 0.003069 3kw3A 376 0.004899 3hurA 395 0.008661 3cpgA 282 1.605 1w8gA 234 2.180 1t5hX 504 3.037 e.23.1.1 106449 3dhvA 512 5.138 3h14A 391 5.182 2r5nA 669 5.220 c.36.1.6,c.36.1.10,c.48.1.1 151591,151592,151593 1ct5A 256 5.808 c.1.6.2 28663 3iahA 256 5.904 1vkmA 297 7.942 c.138.1.1 108670 1li4A 432 8.536 c.2.1.4,c.23.12.3 84616,84617 1j32A 388 8.600 c.67.1.1 77067 3fceA 512 9.324 2pqmA 343 11.19 1fcjA 322 11.69 c.79.1.1 35289 1smdA 496 12.26 b.71.1.1,c.1.8.1 27768,28755 1z45A 699 12.77 b.30.5.4,c.2.1.2 124427,124428 2blnA 305 12.90 b.46.1.1,c.65.1.1 128734,128735 1y7lA 316 14.14 c.79.1.1 122695 3i1jA 247 14.75 1o69A 394 14.95 c.67.1.4 92560 3cw9A 504 15.09 e.23.1.1 157035 1oasA 322 15.15 c.79.1.1 35293 3e7wA 511 15.48 2c81A 418 17.43 3dhpA 496 17.70 b.71.1.1,c.1.8.1 157725,157726 3f1lA 252 17.82 1w7lA 422 18.30 c.67.1.1 109226 3ksuA 262 20.47 3lhlA 287 22.58 1x7gA 261 22.86 c.2.1.2 114929 1mdbA 539 23.13 e.23.1.1 79008 1y0pA 571 23.33 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2ogeA 399 23.89 1cs1A 386 24.37 c.67.1.3 34399 2z9wA 392 24.43 3ju7A 377 25.22 3h7aA 252 25.30 1qjdA 571 25.84 a.138.1.3,c.3.1.4,d.168.1.1 19695,30432,42315 3h2sA 224 26.60 3cogA 403 27.96 2i5gA 325 31.22 3l6eA 235 31.59 3ib7A 330 31.91 2a4kA 263 32.01 c.2.1.2 126156 1ff9A 450 33.22 c.2.1.3,d.81.1.2 30039,39954 3m1aA 281 34.10 1lj1A 571 34.41 a.138.1.3,c.3.1.4,d.168.1.1 78023,78024,78025 2q1sA 377 34.80 3d2lA 243 35.07 1mdoA 393 35.95 c.67.1.4 79013 1o4sA 389 36.28 c.67.1.1 86620 2r8oA 669 36.94 c.36.1.6,c.36.1.10,c.48.1.1 151731,151732,151733 1n5dA 288 37.20 c.2.1.2 80030 2ez2A 456 37.49 1q9iA 571 37.79 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1svvA 359 37.89 c.67.1.1 106054 1qgdA 662 38.82 c.36.1.6,c.36.1.10,c.48.1.1 88367,88368,88369 2gb3A 409 39.84 c.67.1.1 134903 2fnuA 375 40.18 c.67.1.4 133831 3fvsA 422 40.53 3fd0A 409 40.93 1fmtA 314 42.10 b.46.1.1,c.65.1.1 25758,34174 1b5pA 385 42.66 c.67.1.1 90403 1a7aA 432 42.67 c.2.1.4,c.23.12.3 30104,31364 1ua7A 422 42.89 b.71.1.1,c.1.8.1 107759,107760 1e5eA 404 43.31 c.67.1.3 59265 2hufA 393 43.87 1qopB 396 45.85 c.79.1.1 35270 1p2hA 571 46.48 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1e39A 571 46.53 a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1kssA 571 47.66 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 2cb1A 412 48.99 3eagA 326 49.28 1u08A 386 49.45 c.67.1.1 107543 1amuA 563 50.89 e.23.1.1 43351 1gdeA 389 53.01 c.67.1.1 60456 1hp1A 516 53.90 d.114.1.1,d.159.1.2 70976,70977 2v7bA 529 54.30 1nofA 383 55.05 b.71.1.2,c.1.8.3 92020,92021 1y1pA 342 55.21 c.2.1.2 122550 1i24A 404 55.32 c.2.1.2 83663 1vliA 385 56.13 b.85.1.1,c.1.10.6 108830,108831 1m64A 571 57.64 a.138.1.3,c.3.1.4,d.168.1.1 78683,78684,78685 3a1nA 317 57.72 2q3bA 313 58.07 3fbtA 282 59.31 2nwqA 272 59.57 3kkzA 267 60.29 1ve1A 304 61.04 c.79.1.1 120007 3ezsA 376 61.36 3igsA 232 62.17 1bjwA 382 62.20 c.67.1.1 34349 3b3fA 341 62.31 1or8A 340 63.23 c.66.1.6 93451 3mggA 276 64.54 2zdsA 340 64.55 3h55A 400 65.53 1ibjA 464 66.75 c.67.1.3 62162 2cevA 299 66.85 c.42.1.1 32576 3igzB 561 67.09 3fi9A 343 67.27 1pwhA 327 67.33 c.79.1.1 95224 1dtyA 429 68.14 c.67.1.4 34495 3fdbA 377 68.27 1uluA 261 68.75 c.2.1.2 113292 1g94A 448 68.85 b.71.1.1,c.1.8.1 65169,65170 2douA 376 69.09 2axqA 467 69.14 3i28A 555 69.56 2c3zA 222 69.81 1yxmA 303 70.07 c.2.1.2 124192 1b8gA 429 71.28 c.67.1.4 34499 1djuA 388 71.79 c.67.1.1 59116 3g1uA 437 72.72 2hsdA 253 73.06 c.2.1.2 29866 3b8xA 390 74.34 2p91A 285 74.37 2ef5A 290 74.51 2v3fA 505 74.63 b.71.1.2,c.1.8.3 152453,152454 2fytA 340 75.16 c.66.1.6 134391 1sbyA 254 76.51 c.2.1.2 118930 1t2aA 375 76.53 c.2.1.2 99078 2q02A 272 78.63 c.1.15.4 149978 1vl8A 267 78.87 c.2.1.2 108733 2o4cA 380 79.27 1udcA 338 80.62 c.2.1.2 29785 1z7yA 322 81.05 c.79.1.1 124679 1y8cA 246 81.28 c.66.1.43 116563 3gycA 393 81.40 2qmxA 283 81.83 1igs 248 82.02 4uagA 437 82.03 c.5.1.1,c.59.1.1,c.72.2.1 30651,33952,34955 2dsjA 423 82.30 2bllA 345 82.50 c.2.1.2 128733 2z1mA 345 82.90 2e67A 264 83.20 1m7yA 435 83.86 c.67.1.4 78761 1gsoA 431 84.66 b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 3i23A 349 84.91 2v03A 303 85.06 1hx0A 496 85.06 b.71.1.1,c.1.8.1 61346,61347 1xseA 295 85.17 c.2.1.2 115925 1vp4A 425 85.65 c.67.1.1 113935 1b16A 254 86.70 c.2.1.2 29875 1b9hA 388 87.14 c.67.1.4 34488 3lvmA 423 87.34 3ihnA 372 87.60 1mrzA 293 88.14 b.43.5.1,c.26.1.3 91452,91453 2aebA 322 89.17 c.42.1.1 126617 1bag 425 89.35 3e7pA 270 89.72