# List of top-scoring protein chains for T0547.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 2p3eA 420 6.02e-41 1twiA 434 1.36e-39 b.49.2.3,c.1.6.1 107399,107400 1tufA 434 1.38e-39 b.49.2.3,c.1.6.1 107335,107336 2o0tA 467 8.56e-37 1hkvA 453 9.41e-37 b.49.2.3,c.1.6.1 83559,83560 2qghA 425 9.51e-37 3c5qA 425 1.16e-36 2on3A 461 1.44e-36 2oo0A 471 1.51e-36 7odcA 424 2.71e-36 b.49.2.3,c.1.6.1 26488,28650 1d7kA 421 2.74e-36 b.49.2.3,c.1.6.1 26486,28648 2yxxA 386 1.03e-35 1njjA 425 4.25e-35 b.49.2.3,c.1.6.1 91905,91906 1f3tA 425 4.49e-35 b.49.2.3,c.1.6.1 26493,28655 1szrA 425 8.80e-35 b.49.2.3,c.1.6.1 112174,112175 2todA 425 1.59e-34 b.49.2.3,c.1.6.1 26489,28651 1knwA 425 2.26e-32 b.49.2.3,c.1.6.1 90969,90970 2j66A 428 3.92e-32 3btnA 448 2.10e-30 2pljA 419 3.67e-30 2nvaA 372 2.64e-28 2nv9A 372 3.17e-28 3llxA 376 4.17e-11 2dy3A 361 1.01e-08 3ha1A 397 1.40e-08 2vd8A 391 1.86e-08 1xfcA 384 3.18e-08 1vfsA 386 1.46e-07 b.49.2.2,c.1.6.1 108584,108585 2odoA 357 1.51e-07 3gwqA 426 1.85e-07 1rcqA 357 2.16e-07 b.49.2.2,c.1.6.1 104882,104883 3e6eA 371 3.94e-07 2sfpA 388 4.38e-07 b.49.2.2,c.1.6.1 26484,28646 1bd0A 388 4.39e-07 b.49.2.2,c.1.6.1 26480,28642 1ftxA 387 4.39e-07 b.49.2.2,c.1.6.1 76191,76192 1xqlA 388 4.53e-07 3b8wA 379 1.95e-06 3b8vA 379 2.10e-06 3b8tA 379 2.17e-06 2rjhA 379 2.18e-06 3b8uA 379 2.52e-06 3kw3A 376 8.24e-05 3hurA 395 0.000175 3co8A 380 0.001336 1w8gA 234 0.007861 3cpgA 282 0.02005 2vbfA 570 2.601 3c0sA 301 4.843 3bzjA 301 4.896 2j6vA 302 5.501 3c0lA 301 6.003 3c0qA 301 6.931 3ju2A 284 7.114 1dmsA 781 11.17 b.52.2.2,c.81.1.1 26906,35314 2c6qA 351 15.21 2a7rA 366 15.93 3g5sA 443 22.42 2e0zA 345 23.29 1w3hA 359 26.25 c.1.8.3 114140 1w32A 348 26.51 c.1.8.3 114120 2j0jA 656 30.31 1xysA 347 31.01 c.1.8.3 28903 1e5nA 348 31.04 c.1.8.3 28904 1nq6A 302 31.66 c.1.8.3 92046 2avnA 260 33.57 c.66.1.41 127380 1sg9A 282 35.63 c.66.1.30 105526 1clxA 347 35.73 c.1.8.3 28899 1w2pA 348 35.76 c.1.8.3 114102 1nv8A 284 35.78 c.66.1.30 86224 1w2vA 348 36.12 c.1.8.3 114104 1vq1A 294 36.39 c.66.1.30 120067 1wstA 417 36.46 c.67.1.1 121244 2vzsA 1032 36.70 b.1.4.1,b.1.4.1,b.1.4.1,b.18.1.5,c.1.8.3 153727,153728,153729,153730,153731 2azqA 311 36.90 2j0kA 656 37.72 3kl9A 355 40.18 1umgA 362 41.18 d.280.1.1 107956 2ignA 623 42.28 c.3.1.2,d.16.1.1 137369,137370 3k4cA 623 43.15 1zr6A 503 43.48 3k4bA 623 43.87 2zrjA 349 44.45 2fiqA 420 45.14 c.1.10.7 133527 1tt0A 623 45.43 1t3qB 788 45.51 d.41.1.1,d.133.1.1 106369,106370 2zrmA 349 45.57 2a14A 263 45.67 c.66.1.15 125972 2vzoA 1032 45.73 3maxA 367 45.95 2zr9A 349 46.57 2f5vA 595 46.57 c.3.1.2,d.16.1.1 133010,133011 3bg6A 623 47.02 1q7hA 153 47.05 b.122.1.1,d.17.6.2 96042,96043 2vzuA 1032 47.69 1pkxA 592 47.85 c.24.1.3,c.97.1.4 94838,94839 2f6cA 595 48.05 c.3.1.2,d.16.1.1 133037,133038 1tzlA 622 48.07 c.3.1.2,d.16.1.1 112876,112877 1qgoA 264 48.45 c.92.1.2 35596 2zreA 349 49.19 2vztA 1032 49.30 2ppvA 332 52.27 4dmrA 823 53.60 b.52.2.2,c.81.1.1 26905,35313 1e18A 823 53.60 b.52.2.2,c.81.1.1 26907,35315 1e61A 823 53.83 b.52.2.2,c.81.1.1 26908,35316 3blyA 623 54.83 1dmrA 823 55.04 b.52.2.2,c.81.1.1 26904,35312 1j0aA 325 55.42 c.79.1.1 83871 1in0A 163 56.39 d.58.49.1,d.58.49.1 83694,83695 3hsuA 503 56.65 2igmA 623 58.84 3fdyA 623 59.77 1fuiA 591 68.99 b.43.2.1,c.85.1.1 25674,35444 1k2pA 263 69.66 d.144.1.7 72012 2zsgA 359 71.67 1ovmA 552 73.72 c.31.1.3,c.36.1.5,c.36.1.9 87461,87462,87463 3genA 283 75.72 1yt8A 539 81.12 c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2 123996,123997,123998,123999 2w1kA 252 81.99 3k2gA 364 85.89 1woqA 267 88.24 c.55.1.10,c.55.1.10 109462,109463 2ivsA 314 89.01