# List of top-scoring protein chains for t06-w0.5-1-str4-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1twiA	434	4.88e-30	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	3.40e-29		
2qghA	425	2.05e-28		
2p3eA	420	1.25e-27		
2j66A	428	4.14e-27		
2yxxA	386	4.74e-27		
1knwA	425	4.26e-26	b.49.2.3,c.1.6.1	90969,90970
2pljA	419	5.79e-26		
2nvaA	372	1.24e-25		
7odcA	424	1.65e-25	b.49.2.3,c.1.6.1	26488,28650
3llxA	376	5.08e-18		
3gwqA	426	7.13e-18		
1xfcA	384	2.19e-17		
2dy3A	361	5.94e-17		
1vfsA	386	1.22e-16	b.49.2.2,c.1.6.1	108584,108585
1rcqA	357	1.52e-16	b.49.2.2,c.1.6.1	104882,104883
3kw3A	376	5.08e-16		
3hurA	395	1.31e-15		
2vd8A	391	1.69e-15		
1bd0A	388	3.73e-15	b.49.2.2,c.1.6.1	26480,28642
3co8A	380	6.56e-15		
3e6eA	371	2.44e-14		
1w8gA	234	2.54e-05		
1ct5A	256	0.001617	c.1.6.2	28663
3cpgA	282	0.002224		
1qtwA	285	1.865	c.1.15.1	29392
3lhlA	287	1.875		
2pajA	492	7.045	b.92.1.4,c.1.9.9	149344,149345
3ciwA	348	7.086		
1tv8A	340	7.595	c.1.28.3	107352
2ef5A	290	7.732		
1m5wA	243	9.510	c.1.24.1	84836
3m1rA	322	10.66		
3jzmA	519	11.79		
2v82A	212	13.89		
2kksA	146	13.98		
2q02A	272	14.05	c.1.15.4	149978
2csgA	424	18.33	b.82.2.12	130768
2wklA	497	18.41		
3canA	182	19.42		
2rebA	352	20.11	c.37.1.11,d.48.1.1	32282,38767
1nvmA	345	21.25	a.5.7.1,c.1.10.5	86249,86250
2g0wA	296	22.89	c.1.15.4	134503
3iixA	348	23.51		
2qw5A	335	25.26		
2gptA	523	26.43		
1pj5A	830	27.42	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
1xi3A	215	30.78	c.1.3.1	109601
2v3gA	283	32.63	c.1.8.3	152457
3enkA	341	33.91		
3eywA	413	34.52		
3cvuA	543	34.54		
1vc4A	254	35.01	c.1.2.4	100557
2fliA	220	35.09	c.1.2.2	133714
3kwsA	287	36.62		
2citA	282	37.80	c.1.8.3	130499
1w8sA	263	38.72	c.1.10.1	120744
3f7jA	276	39.31		
3hv8A	268	40.38		
1p1mA	406	40.64	b.92.1.4,c.1.9.9	87696,87697
3i6iA	346	40.82		
2a0mA	316	42.24	c.42.1.1	125960
2fb2A	340	42.83		
3fstA	304	43.24		
1ps9A	671	44.48	c.1.4.1,c.3.1.1,c.4.1.1	95076,95077,95078
2i57A	438	44.52		
3cnyA	301	45.26		
1kewA	361	46.35	c.2.1.2	68544
2b76A	602	46.82	a.7.3.1,c.3.1.4,d.168.1.1	128009,128010,128011
1u94A	356	46.83	c.37.1.11,d.48.1.1	107743,107744
2nvwA	479	48.24	c.2.1.3,d.81.1.5	138665,138666
3fdkA	323	48.57		
2zxiA	637	48.62		
3iv3A	332	49.40		
2zdsA	340	50.32		
2aebA	322	50.55	c.42.1.1	126617
3cqjA	295	51.04		
1tqjA	230	52.18	c.1.2.2	107228
1hw6A	278	52.39	c.1.7.1	61296
3igsA	232	53.60		
1y44A	320	55.64	d.157.1.7	122608
1h6vA	499	56.10	c.3.1.5,c.3.1.5,d.87.1.1	60693,60694,60695
3lufA	259	57.07		
3dtyA	398	57.13		
3figA	646	57.43		
1vbjA	281	58.79		
1h1yA	228	59.58	c.1.2.2	76506
3hv9A	265	60.58		
3elfA	349	60.93		
2zzcA	513	61.27		
1aq0A	306	63.44	c.1.8.3	28842
2v3fA	505	63.65	b.71.1.2,c.1.8.3	152453,152454
3bblA	287	63.97		
2gagB	405	65.31		
1h5yA	253	66.95	c.1.2.1	65638
1wohA	305	67.65	c.42.1.1	109446
2fiqA	420	68.96	c.1.10.7	133527
2de6A	392	69.54	b.33.1.2,d.129.3.3	131415,131416
3fsuA	304	69.79		
3ewyA	260	70.11		
1ei6A	406	73.65	c.76.1.4	90443
3lmzA	257	74.53		
2csuA	457	75.42	c.2.1.8,c.23.4.1,c.23.4.1	130781,130782,130783
2a5hA	416	75.66		
3iivA	263	77.88		
1ynpA	317	78.98		
3guvA	167	79.82		
1wy5A	317	79.90	c.26.2.5,d.229.1.1	121428,121429
3mmzA	176	80.74		
1qo2A	241	81.18	c.1.2.1	28533
2a0nA	265	81.96	c.1.2.1	125961
3fwzA	140	82.17		
1g67A	225	83.20	c.1.3.1	60311
2hbvA	334	83.85	c.1.9.15	136320
2w0mA	235	84.31		
2zklA	369	84.37		
2axqA	467	84.40		
3sil	379	85.97		
3f4cA	332	86.24		
3ctlA	231	87.06		
1xp8A	366	87.50	c.37.1.11,d.48.1.1	115735,115736
1gvfA	286	88.67	c.1.10.2	70599
1qwkA	317	89.06	c.1.7.1	96482
1d3vA	323	89.25	c.42.1.1	32559
1k77A	260	89.44	c.1.15.5	72096