# List of top-scoring protein chains for t06-w0.5-1-pb-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1twiA	434	2.79e-25	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	9.08e-25		
2qghA	425	5.26e-24		
2p3eA	420	1.50e-23		
2j66A	428	5.37e-23		
2yxxA	386	1.19e-22		
2pljA	419	3.49e-22		
1knwA	425	9.02e-22	b.49.2.3,c.1.6.1	90969,90970
2nvaA	372	1.09e-21		
7odcA	424	1.56e-21	b.49.2.3,c.1.6.1	26488,28650
3llxA	376	3.31e-15		
1xfcA	384	8.92e-15		
3gwqA	426	2.26e-14		
2dy3A	361	7.71e-14		
1vfsA	386	1.09e-13	b.49.2.2,c.1.6.1	108584,108585
3kw3A	376	1.38e-13		
1rcqA	357	1.40e-13	b.49.2.2,c.1.6.1	104882,104883
3hurA	395	6.81e-13		
2vd8A	391	1.17e-12		
1bd0A	388	1.69e-12	b.49.2.2,c.1.6.1	26480,28642
3co8A	380	6.39e-12		
3e6eA	371	7.02e-12		
1w8gA	234	0.000169		
3cpgA	282	0.006697		
1ct5A	256	0.02975	c.1.6.2	28663
3lhlA	287	1.975		
1qtwA	285	2.606	c.1.15.1	29392
3ciwA	348	4.211		
2pajA	492	6.695	b.92.1.4,c.1.9.9	149344,149345
1nvmA	345	9.99	a.5.7.1,c.1.10.5	86249,86250
2gptA	523	10.72		
2o7sA	523	11.34		
2q02A	272	13.24	c.1.15.4	149978
2v82A	212	22.64		
2ef5A	290	24.91		
1tv8A	340	25.86	c.1.28.3	107352
1w8sA	263	27.51	c.1.10.1	120744
3etcA	580	31.36		
2g0wA	296	34.78	c.1.15.4	134503
3gsiA	827	36.10		
3iixA	348	36.59		
1m5wA	243	37.90	c.1.24.1	84836
1t5hX	504	38.13	e.23.1.1	106449
2v3gA	283	38.24	c.1.8.3	152457
2kksA	146	38.73		
1h1yA	228	39.65	c.1.2.2	76506
3dc8A	490	41.48		
3lnpA	468	41.48		
3canA	182	42.28		
3fdkA	323	42.93		
3lmzA	257	45.72		
3c0qA	301	46.47		
3jzmA	519	48.43		
3m1rA	322	50.32		
3cnyA	301	50.70		
3eywA	413	52.41		
2fliA	220	53.07	c.1.2.2	133714
1xi3A	215	53.23	c.1.3.1	109601
3hjvA	312	54.09		
1gqnA	252	54.51	c.1.10.1	90514
3htwA	328	56.98		
1wznA	252	57.87	c.66.1.43	121525
2qulA	290	58.31		
3enkA	341	61.15		
1yx1A	264	61.16	c.1.15.7	124169
2wvgA	568	61.63		
3kwsA	287	63.36		
2fiqA	420	63.76	c.1.10.7	133527
2zklA	369	65.16		
1y8cA	246	65.69	c.66.1.43	116563
3ktcA	333	65.95		
2rebA	352	66.94	c.37.1.11,d.48.1.1	32282,38767
1yt8A	539	67.70	c.46.1.2,c.46.1.2,c.46.1.2,c.46.1.2	123996,123997,123998,123999
3ju2A	284	68.31		
3igsA	232	70.94		
2a5hA	416	71.56		
3cqjA	295	72.53		
3e2qA	551	72.69		
3hv8A	268	75.05		
3i6iA	346	75.12		
3g7sA	549	75.79		
3m7wA	255	76.23		
1vc4A	254	76.52	c.1.2.4	100557
2wklA	497	76.75		
1a53	247	77.22		
3lb0A	276	78.41		
1n7kA	234	79.38	c.1.10.1	85374
1tx2A	297	80.13	c.1.21.1	107420
3f4cA	332	83.49		
1ad1A	266	84.26	c.1.21.1	29668
3cvuA	543	86.53		
2csgA	424	86.57	b.82.2.12	130768
3c96A	415	86.67	c.3.1.2,d.16.1.2	156122,156123
3inpA	246	88.27		
1wohA	305	88.39	c.42.1.1	109446