# List of top-scoring protein chains for t06-w0.5-1-o_sep-0.1-scores hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://compbio.soe.ucsc.edu/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	SCOP_domain	SCOP_suid
5S	5N	12S	12S	10N
1twiA	434	4.06e-31	b.49.2.3,c.1.6.1	107399,107400
2o0tA	467	1.28e-30		
2qghA	425	1.62e-29		
2p3eA	420	9.07e-29		
2j66A	428	2.72e-28		
2yxxA	386	3.68e-28		
2pljA	419	3.96e-27		
1knwA	425	5.10e-27	b.49.2.3,c.1.6.1	90969,90970
2nvaA	372	1.20e-26		
7odcA	424	2.82e-26	b.49.2.3,c.1.6.1	26488,28650
3gwqA	426	6.70e-19		
3llxA	376	8.07e-19		
1xfcA	384	3.20e-18		
2dy3A	361	1.46e-17		
1rcqA	357	2.48e-17	b.49.2.2,c.1.6.1	104882,104883
1vfsA	386	4.71e-17	b.49.2.2,c.1.6.1	108584,108585
3kw3A	376	7.70e-17		
3hurA	395	2.16e-16		
1bd0A	388	6.88e-16	b.49.2.2,c.1.6.1	26480,28642
2vd8A	391	1.46e-15		
3co8A	380	2.73e-15		
3e6eA	371	8.53e-15		
1w8gA	234	2.36e-05		
3cpgA	282	0.002206		
1ct5A	256	0.003886	c.1.6.2	28663
1qtwA	285	0.8385	c.1.15.1	29392
3lhlA	287	1.547		
2qw5A	335	6.483		
1m5wA	243	6.990	c.1.24.1	84836
2ef5A	290	9.614		
2kksA	146	11.92		
2gptA	523	15.16		
2g0wA	296	15.84	c.1.15.4	134503
1tv8A	340	15.89	c.1.28.3	107352
3kwsA	287	16.49		
3ciwA	348	17.06		
2q02A	272	17.97	c.1.15.4	149978
3jzmA	519	18.11		
3gsiA	827	18.66		
2i57A	438	18.72		
2rebA	352	19.42	c.37.1.11,d.48.1.1	32282,38767
3cqjA	295	21.98		
2zxiA	637	22.85		
1wohA	305	27.14	c.42.1.1	109446
3hv8A	268	27.31		
3cnyA	301	29.83		
2b76A	602	31.70	a.7.3.1,c.3.1.4,d.168.1.1	128009,128010,128011
3eywA	413	31.94		
2wklA	497	32.02		
3hv9A	265	34.38		
1tedA	393	34.81	c.95.1.2	106807
2csgA	424	35.90	b.82.2.12	130768
3m1rA	322	36.27		
2aebA	322	37.15	c.42.1.1	126617
3ktcA	333	37.20		
2v82A	212	38.65		
3ju2A	284	39.30		
2heuA	401	40.38		
2wm5A	435	41.10		
1pj5A	830	43.07	b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1	94742,94743,94744,94745
3c96A	415	43.16	c.3.1.2,d.16.1.2	156122,156123
2qzsA	485	47.41		
3beoA	375	47.78		
2v3gA	283	50.11	c.1.8.3	152457
1nvmA	345	50.53	a.5.7.1,c.1.10.5	86249,86250
2zdsA	340	51.27		
3cvuA	543	53.25		
1xp8A	366	54.32	c.37.1.11,d.48.1.1	115735,115736
1k77A	260	56.67	c.1.15.5	72096
3f7jA	276	57.06		
1u94A	356	57.65	c.37.1.11,d.48.1.1	107743,107744
2pajA	492	58.73	b.92.1.4,c.1.9.9	149344,149345
3iixA	348	59.18		
3ib7A	330	60.66		
3dx5A	286	62.17		
1y44A	320	63.26	d.157.1.7	122608
2a0mA	316	64.44	c.42.1.1	125960
1kewA	361	64.97	c.2.1.2	68544
2de6A	392	67.13	b.33.1.2,d.129.3.3	131415,131416
2zklA	369	67.18		
1v4vA	376	70.19	c.87.1.3	100313
1xi3A	215	71.18	c.1.3.1	109601
1k0iA	394	71.41	c.3.1.2,d.16.1.2	67942,67943
3hjvA	312	72.17		
1wznA	252	75.85	c.66.1.43	121525
2d5bA	500	75.96	a.27.1.1,c.26.1.1	131268,131269
2o7sA	523	76.02		
1y0pA	571	76.90	a.138.1.3,c.3.1.4,d.168.1.1	122507,122508,122509
1lfkA	398	79.59	a.104.1.1	77926
3itvA	438	80.73		
2wk1A	282	82.26		
2nvwA	479	82.65	c.2.1.3,d.81.1.5	138665,138666
3lmzA	257	84.58		
1p1mA	406	86.30	b.92.1.4,c.1.9.9	87696,87697
3canA	182	86.52		
3m0oA	389	87.30		
3iv3A	332	89.07