# List of top-scoring protein chains for t06-w0.5-1-o_notor2-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 3.03e-29 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 8.05e-29 2qghA 425 8.06e-28 2p3eA 420 5.87e-27 2j66A 428 1.43e-26 2yxxA 386 2.37e-26 2pljA 419 1.69e-25 1knwA 425 1.95e-25 b.49.2.3,c.1.6.1 90969,90970 2nvaA 372 5.10e-25 7odcA 424 1.38e-24 b.49.2.3,c.1.6.1 26488,28650 3gwqA 426 8.80e-18 3llxA 376 1.03e-17 1xfcA 384 3.09e-17 2dy3A 361 1.95e-16 1rcqA 357 2.68e-16 b.49.2.2,c.1.6.1 104882,104883 1vfsA 386 3.80e-16 b.49.2.2,c.1.6.1 108584,108585 3kw3A 376 8.28e-16 3hurA 395 2.97e-15 1bd0A 388 6.19e-15 b.49.2.2,c.1.6.1 26480,28642 2vd8A 391 1.47e-14 3co8A 380 2.50e-14 3e6eA 371 7.05e-14 1w8gA 234 5.48e-05 3cpgA 282 0.003606 1ct5A 256 0.006239 c.1.6.2 28663 1qtwA 285 0.8790 c.1.15.1 29392 3lhlA 287 2.484 1m5wA 243 5.277 c.1.24.1 84836 2qw5A 335 5.465 2ef5A 290 9.96 1tv8A 340 10.68 c.1.28.3 107352 2q02A 272 13.61 c.1.15.4 149978 2rebA 352 13.82 c.37.1.11,d.48.1.1 32282,38767 3ciwA 348 13.91 3kwsA 287 14.76 2i57A 438 16.83 3jzmA 519 17.10 2g0wA 296 17.69 c.1.15.4 134503 2kksA 146 18.05 3cqjA 295 22.80 1u94A 356 23.16 c.37.1.11,d.48.1.1 107743,107744 2gptA 523 24.71 3hv8A 268 26.60 3ktcA 333 27.19 3ju2A 284 27.20 2zdsA 340 28.44 1wohA 305 28.51 c.42.1.1 109446 2wklA 497 28.79 3cnyA 301 29.39 1xp8A 366 32.32 c.37.1.11,d.48.1.1 115735,115736 3m1rA 322 32.60 2csgA 424 34.49 b.82.2.12 130768 3hv9A 265 34.91 2zxiA 637 36.11 2v82A 212 37.70 2aebA 322 39.82 c.42.1.1 126617 2qzsA 485 41.74 2wm5A 435 41.81 2b76A 602 42.51 a.7.3.1,c.3.1.4,d.168.1.1 128009,128010,128011 3gsiA 827 43.11 3dx5A 286 43.57 3f7jA 276 44.37 3iixA 348 44.76 2v3gA 283 46.53 c.1.8.3 152457 1i60A 278 48.12 c.1.15.4 71118 1k77A 260 48.43 c.1.15.5 72096 3eywA 413 48.66 2qulA 290 49.09 3c96A 415 50.71 c.3.1.2,d.16.1.2 156122,156123 3cvuA 543 54.16 1muwA 386 54.36 c.1.15.3 79495 1pj5A 830 56.61 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 3itvA 438 58.64 3beoA 375 59.39 3enkA 341 59.43 1y0pA 571 61.88 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 2hk0A 309 62.02 1nvmA 345 62.29 a.5.7.1,c.1.10.5 86249,86250 3l23A 303 64.68 1p1mA 406 65.57 b.92.1.4,c.1.9.9 87696,87697 2d5bA 500 67.65 a.27.1.1,c.26.1.1 131268,131269 3lmzA 257 68.42 3iv3A 332 68.57 2v3fA 505 69.58 b.71.1.2,c.1.8.3 152453,152454 1xi3A 215 70.73 c.1.3.1 109601 1tedA 393 72.18 c.95.1.2 106807 2de6A 392 72.96 b.33.1.2,d.129.3.3 131415,131416 3canA 182 73.03 2heuA 401 73.27 1kewA 361 73.49 c.2.1.2 68544 3c0qA 301 74.03 2citA 282 74.63 c.1.8.3 130499 2pajA 492 75.18 b.92.1.4,c.1.9.9 149344,149345 2zklA 369 75.72 1k0iA 394 75.84 c.3.1.2,d.16.1.2 67942,67943 3figA 646 75.91 2a0mA 316 76.82 c.42.1.1 125960 1v4vA 376 78.40 c.87.1.3 100313 2fb2A 340 78.54 3gnxA 387 78.65 3elfA 349 82.17 2gblA 519 83.31 c.37.1.11,c.37.1.11 134911,134912 2bvyA 475 85.48 b.1.18.2,c.1.8.3 129301,129302 3ipwA 325 85.62 1wznA 252 86.17 c.66.1.43 121525 2gagB 405 86.60 2v1xA 591 86.61 2w0mA 235 87.52 3ib7A 330 87.93 2nx9A 464 88.76 2csuA 457 89.04 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783 2zr9A 349 89.10 2nvwA 479 89.25 c.2.1.3,d.81.1.5 138665,138666