# List of top-scoring protein chains for t06-w0.5-1-o_notor-0.1-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://compbio.soe.ucsc.edu/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue SCOP_domain SCOP_suid 5S 5N 12S 12S 10N 1twiA 434 1.06e-30 b.49.2.3,c.1.6.1 107399,107400 2o0tA 467 3.30e-30 2qghA 425 3.73e-29 2p3eA 420 3.29e-28 2j66A 428 9.45e-28 2yxxA 386 1.46e-27 2pljA 419 1.28e-26 1knwA 425 1.55e-26 b.49.2.3,c.1.6.1 90969,90970 2nvaA 372 2.85e-26 7odcA 424 1.06e-25 b.49.2.3,c.1.6.1 26488,28650 3gwqA 426 1.50e-18 3llxA 376 1.66e-18 1xfcA 384 5.23e-18 2dy3A 361 3.15e-17 1rcqA 357 4.10e-17 b.49.2.2,c.1.6.1 104882,104883 1vfsA 386 7.17e-17 b.49.2.2,c.1.6.1 108584,108585 3kw3A 376 1.11e-16 3hurA 395 5.07e-16 1bd0A 388 1.32e-15 b.49.2.2,c.1.6.1 26480,28642 2vd8A 391 3.62e-15 3co8A 380 6.12e-15 3e6eA 371 1.48e-14 1w8gA 234 3.59e-05 3cpgA 282 0.002451 1ct5A 256 0.003783 c.1.6.2 28663 1qtwA 285 1.049 c.1.15.1 29392 3lhlA 287 2.134 1m5wA 243 4.827 c.1.24.1 84836 2qw5A 335 6.871 2ef5A 290 9.463 3kwsA 287 11.60 1tv8A 340 12.57 c.1.28.3 107352 2kksA 146 14.42 3ciwA 348 16.03 2i57A 438 16.25 3jzmA 519 16.88 2rebA 352 19.76 c.37.1.11,d.48.1.1 32282,38767 2csgA 424 20.03 b.82.2.12 130768 2gptA 523 22.25 2g0wA 296 22.67 c.1.15.4 134503 2zxiA 637 23.29 1u94A 356 24.70 c.37.1.11,d.48.1.1 107743,107744 2q02A 272 25.91 c.1.15.4 149978 3gsiA 827 27.76 3cnyA 301 31.19 3cqjA 295 31.35 3ju2A 284 31.78 2wklA 497 32.20 2aebA 322 32.71 c.42.1.1 126617 3hv8A 268 34.31 2b76A 602 34.98 a.7.3.1,c.3.1.4,d.168.1.1 128009,128010,128011 2v3gA 283 35.49 c.1.8.3 152457 2wm5A 435 36.22 3m1rA 322 39.64 3ktcA 333 40.65 2zdsA 340 40.74 2heuA 401 40.90 3hv9A 265 41.37 1wohA 305 42.64 c.42.1.1 109446 3c96A 415 44.47 c.3.1.2,d.16.1.2 156122,156123 3cvuA 543 46.23 3eywA 413 46.47 1tedA 393 48.57 c.95.1.2 106807 1k77A 260 48.60 c.1.15.5 72096 3beoA 375 49.77 1pj5A 830 49.96 b.44.2.1,c.3.1.2,d.16.1.5,d.250.1.1 94742,94743,94744,94745 1lfkA 398 51.13 a.104.1.1 77926 2v82A 212 52.12 1ei6A 406 53.14 c.76.1.4 90443 1nvmA 345 53.23 a.5.7.1,c.1.10.5 86249,86250 1xp8A 366 53.84 c.37.1.11,d.48.1.1 115735,115736 3itvA 438 54.23 3enkA 341 54.40 3iixA 348 54.45 2nvwA 479 55.13 c.2.1.3,d.81.1.5 138665,138666 2qzsA 485 55.90 2d5bA 500 55.94 a.27.1.1,c.26.1.1 131268,131269 2de6A 392 60.83 b.33.1.2,d.129.3.3 131415,131416 3dx5A 286 61.78 2zklA 369 63.03 2a0mA 316 63.30 c.42.1.1 125960 1i60A 278 64.05 c.1.15.4 71118 1p1mA 406 64.79 b.92.1.4,c.1.9.9 87696,87697 3mmzA 176 64.98 1y0pA 571 65.41 a.138.1.3,c.3.1.4,d.168.1.1 122507,122508,122509 1kewA 361 66.48 c.2.1.2 68544 2wk1A 282 66.62 1k0iA 394 67.52 c.3.1.2,d.16.1.2 67942,67943 2v1xA 591 68.66 2pajA 492 70.26 b.92.1.4,c.1.9.9 149344,149345 1y44A 320 71.39 d.157.1.7 122608 3ib7A 330 71.91 2v3fA 505 72.72 b.71.1.2,c.1.8.3 152453,152454 3figA 646 73.30 3iv3A 332 75.53 3f7jA 276 76.13 2qulA 290 77.26 2fb2A 340 78.83 3fstA 304 82.90 1v4vA 376 84.88 c.87.1.3 100313 1xi3A 215 85.73 c.1.3.1 109601 2bvyA 475 86.66 b.1.18.2,c.1.8.3 129301,129302 3l23A 303 87.68 3elfA 349 88.36 2csuA 457 88.42 c.2.1.8,c.23.4.1,c.23.4.1 130781,130782,130783